J5_9SRA_009
3D structure
- PDB id
- 9SRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 9SRA|1|1|U|2316, 9SRA|1|1|A|2662, 9SRA|1|1|G|2663, 9SRA|1|1|A|2664, 9SRA|1|1|A|2665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9SRA_009 not in the Motif Atlas
- Homologous match to J5_4V9F_008
- Geometric discrepancy: 0.0748
- The information below is about J5_4V9F_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.3
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
9SRA|1|1|U|2314
9SRA|1|1|U|2315
9SRA|1|1|U|2316
9SRA|1|1|A|2317
*
9SRA|1|1|U|2473
9SRA|1|1|U|2474
9SRA|1|1|U|2475
9SRA|1|1|G|2476
*
9SRA|1|1|C|2489
9SRA|1|1|G|2490
*
9SRA|1|1|C|2512
9SRA|1|1|G|2513
*
9SRA|1|1|C|2661
9SRA|1|1|A|2662
9SRA|1|1|G|2663
9SRA|1|1|A|2664
9SRA|1|1|A|2665
9SRA|1|1|A|2666
9SRA|1|1|A|2667
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BB
- Large ribosomal subunit protein uL2
- Chain BL
- Large ribosomal subunit protein uL15
- Chain BM
- Large ribosomal subunit protein eL15
- Chain BR
- Large ribosomal subunit protein eL21
- Chain Bj
- Large ribosomal subunit protein eL42
- Chain H
- Dehydrogenase
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