J5_9SRC_004
3D structure
- PDB id
- 9SRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- GGAGUU*AGAC*GUUC*GC*GCGGAUC
- Length
- 23 nucleotides
- Bulged bases
- 9SRC|1|1|U|1513
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9SRC_004 not in the Motif Atlas
- Homologous match to J5_4V9F_003
- Geometric discrepancy: 0.0992
- The information below is about J5_4V9F_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_15067.1
- Basepair signature
- cWW-tSH-tSS-tHH-F-F-F-tWS-cWW-cWW-F-cWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
9SRC|1|1|G|790
9SRC|1|1|G|791
9SRC|1|1|A|792
9SRC|1|1|G|793
9SRC|1|1|U|794
9SRC|1|1|U|795
*
9SRC|1|1|A|917
9SRC|1|1|G|918
9SRC|1|1|A|919
9SRC|1|1|C|920
*
9SRC|1|1|G|1060
9SRC|1|1|U|1061
9SRC|1|1|U|1062
9SRC|1|1|C|1063
*
9SRC|1|1|G|1454
9SRC|1|1|C|1455
*
9SRC|1|1|G|1508
9SRC|1|1|C|1509
9SRC|1|1|G|1510
9SRC|1|1|G|1511
9SRC|1|1|A|1512
9SRC|1|1|U|1513
9SRC|1|1|C|1514
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain B6
- 30S ribosomal protein S24e
- Chain BD
- Large ribosomal subunit protein uL4
- Chain BL
- Large ribosomal subunit protein uL15
- Chain BP
- Large ribosomal subunit protein eL18
- Chain Bb
- Large ribosomal subunit protein eL32
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