J5_9SS4_001

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

9SS4|1|D2|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SS4|1|D2|C|47
9SS4|1|D2|G|48
9SS4|1|D2|A|49
9SS4|1|D2|U|50
9SS4|1|D2|G|51
9SS4|1|D2|A|52
9SS4|1|D2|A|53
9SS4|1|D2|G|54
*
9SS4|1|D2|C|116
9SS4|1|D2|G|117
9SS4|1|D2|A|118
9SS4|1|D2|A|119
9SS4|1|D2|U|120
9SS4|1|D2|G|121
*
9SS4|1|D2|C|130
9SS4|1|D2|A|131
*
9SS4|1|D2|U|148
9SS4|1|D2|A|149
9SS4|1|D2|U|150
*
9SS4|1|D2|A|176
9SS4|1|D2|G|177
9SS4|1|D2|G|178

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B7

Large ribosomal subunit protein bL34