J5_9SS4_006
3D structure
- PDB id
- 9SS4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 9SS4|1|D2|U|2076, 9SS4|1|D2|G|2428, 9SS4|1|D2|G|2429, 9SS4|1|D2|A|2430, 9SS4|1|D2|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9SS4_006 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.0869
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9SS4|1|D2|U|2074
9SS4|1|D2|U|2075
9SS4|1|D2|U|2076
9SS4|1|D2|A|2077
*
9SS4|1|D2|U|2243
9SS4|1|D2|U|2244
9SS4|1|D2|U|2245
9SS4|1|D2|G|2246
*
9SS4|1|D2|C|2258
9SS4|1|D2|U|2259
*
9SS4|1|D2|A|2281
9SS4|1|D2|G|2282
*
9SS4|1|D2|C|2427
9SS4|1|D2|G|2428
9SS4|1|D2|G|2429
9SS4|1|D2|A|2430
9SS4|1|D2|U|2431
9SS4|1|D2|A|2432
9SS4|1|D2|A|2433
9SS4|1|D2|A|2434
9SS4|1|D2|A|2435
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain B0
- Large ribosomal subunit protein bL27
- Chain B1
- Large ribosomal subunit protein bL28
- Chain B6
- Large ribosomal subunit protein bL33
- Chain B8
- Large ribosomal subunit protein bL35
- Chain BB
- Large ribosomal subunit protein uL2
- Chain BO
- Large ribosomal subunit protein uL15
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