J5_9SUM_007

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AGAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_02492.5

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-F-F-cWW-F-cWW-tWH-cWW-F-cWW-tHH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9SUM|1|CA|C|31
9SUM|1|CA|U|32
9SUM|1|CA|U|33
9SUM|1|CA|G|34
9SUM|1|CA|U|35
*
9SUM|1|CA|A|462
9SUM|1|CA|A|463
9SUM|1|CA|A|464
9SUM|1|CA|U|465
9SUM|1|CA|A|466
9SUM|1|CA|A|467
9SUM|1|CA|C|468
*
9SUM|1|CA|G|498
9SUM|1|CA|G|499
9SUM|1|CA|A|500
9SUM|1|CA|A|501
9SUM|1|CA|U|502
9SUM|1|CA|G|503
9SUM|1|CA|A|504
9SUM|1|CA|G|505
*
9SUM|1|CA|C|525
9SUM|1|CA|G|526
9SUM|1|CA|A|527
9SUM|1|CA|G|528
9SUM|1|CA|G|529
9SUM|1|CA|A|530
9SUM|1|CA|A|531
9SUM|1|CA|C|532
9SUM|1|CA|A|533
9SUM|1|CA|A|534
9SUM|1|CA|U|535
*
9SUM|1|CA|A|581
9SUM|1|CA|G|582
9SUM|1|CA|A|583
9SUM|1|CA|G|584

Current chains

Chain CA

18S rRNA

Nearby chains

Chain ZB

40S ribosomal protein S9-A

Chain ZP

40S ribosomal protein S23

Chain ZW

Small ribosomal subunit protein eS30