Motif J5_02492.5 Version J5_02492.5 of this group appears in releases 4.14 to 4.14

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5	break		6		7		8		9		10		11		12	break		13		14		15		16		17		18		19		20	break		21		22		23		24		25		26		27		28		29		30		31	break		32		33		34		35	1-35	2-34	5-6	9-30	10-15	10-24	11-14	11-24	12-13	14-24	15-24	16-26	17-23	18-28	19-22	20-21	31-32
1	J5_9SUM_007	9SUM	0.0751	0	CA	SSU rRNA	C	31	U	32	U	33	G	34	U	35	*	A	462	A	463	A	464	U	465	A	466	A	467	C	468	*	G	498	G	499	A	500	A	501	U	502	G	503	A	504	G	505	*	C	525	G	526	A	527	G	528	G	529	A	530	A	531	C	532	A	533	A	534	U	535	*	A	581	G	582	A	583	G	584	cWW		cWW	cWH	cwW	ntWS	cWW		cWW	ntHW		ntWH	tWH		tHS	cWW	cWW
2	J5_9PN5_008	9PN5	0.0000	0	B5	SSU rRNA	C	31	U	32	U	33	G	34	U	35	*	A	473	A	474	A	475	U	476	A	477	A	478	C	479	*	G	509	G	510	A	511	A	512	U	513	G	514	A	515	G	516	*	C	536	G	537	A	538	G	539	G	540	A	541	A	542	C	543	A	544	A	545	U	546	*	A	592	U	593	A	594	G	595	cWW		cWW	cWH	cwW		ntHH		cWW		tHH	tWH	tWH	cWW	tHS	cWW	cWW
3	J5_8CRE_019	8CRE	0.0677	0	CM	SSU rRNA	C	31	U	32	U	33	G	34	U	35	*	A	471	A	472	A	473	U	474	A	475	A	476	C	477	*	G	507	G	508	A	509	A	510	U	511	G	512	A	513	G	514	*	C	534	G	535	A	536	G	537	G	538	A	539	A	540	C	541	A	542	A	543	U	544	*	A	590	A	591	A	592	G	593	cWW		cWW	cWH	cwW		cWW	ncHH	cWW		ntHH	ntWH	tWH	cWW	tHS	cWW	cWW
4	J5_9H3G_008	9H3G	0.0721	0	h1	SSU rRNA	C	31	U	32	U	33	G	34	U	35	*	A	475	A	476	A	477	U	478	A	479	A	480	C	481	*	G	511	G	512	A	513	A	514	U	515	G	516	A	517	G	518	*	C	538	G	539	A	540	G	541	G	542	A2M	543	U	544	C	545	C	546	A	547	U	548	*	A	594	U	595	A	596	OMG	597	cWW	ntsS	cWW	cWH	cwW		cWW		cWW		ntHH	tWH	tWH	cWW	tHS	cWW	cWW
5	J5_8GLP_007	8GLP	0.0947	0	S2	SSU rRNA	C	30	U	31	U	32	G	33	PSU	34	*	A	521	A	522	A	523	U	524	A	525	A	526	C	527	*	G	558	G	559	A	560	A	561	U	562	G	563	A	564	G	565	*	C	585	G	586	A	587	G	588	G	589	A2M	590	U	591	C	592	C	593	A	594	U	595	*	A	641	U	642	A	643	OMG	644	cWW		cWW	cWH	cwW		cWW	ncHH	cWW		ntHH	ntWH	ntWH	cWW	tHS	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUUGUAAAUAACGGAAUGAGCGAGGAACAAUAGAG	1
CUUGUAAAUAACGGAAUGAGCGAGGAACAAUAUAG	1
CUUGUAAAUAACGGAAUGAGCGAGGAACAAUAAAG	1
CUUGUAAAUAACGGAAUGAGCGAGG(A2M)UCCAUAUAOMG	1
CUUGPSUAAAUAACGGAAUGAGCGAGG(A2M)UCCAUAUAOMG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUGAAUAAGAAUGAGAGG(A2M)UCCAUA	2
UUGAAUAAGAAUGAGAGGAACAAGA	1
UUGAAUAAGAAUGAGAGGAACAAUA	1
UUGAAUAAGAAUGAGAGGAACAAAA	1

Release history

Release	4.14
Date	2026-09-09
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (5)
Basepair signature: cWW-F-F-F-F-F-cWW-cWW-cWH-F-F-F-cWW-F-cWW-tWH-cWW-F-cWW-tHH-tWH-tHS-cWW
Heat map statistics: Min 0.07 | Avg 0.07 | Max 0.10

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Coloring options: Nucleotide numbers

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