J5_9SYH_005

3D structure

PDB id

9SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from deltaRlmE strain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.89 Å

Loop

Sequence

CAG*CGUAC*GGG*CA*UG

Length

15 nucleotides

Bulged bases

9SYH|1|a|A|532, 9SYH|1|a|U|562

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SYH|1|a|C|531
9SYH|1|a|A|532
9SYH|1|a|G|533
*
9SYH|1|a|C|560
9SYH|1|a|G|561
9SYH|1|a|U|562
9SYH|1|a|A|563
9SYH|1|a|C|564
*
9SYH|1|a|G|577
9SYH|1|a|G|578
9SYH|1|a|G|579
*
9SYH|1|a|C|1261
9SYH|1|a|A|1262
*
9SYH|1|a|U|2017
9SYH|1|a|G|2018

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain p

Large ribosomal subunit protein bL20

Chain q

Large ribosomal subunit protein bL21

Chain r

Large ribosomal subunit protein uL22

Chain z

Large ribosomal subunit protein bL32