J5_9SYR_001
3D structure
- PDB id
- 9SYR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.55 Å
Loop
- Sequence
- GUG*CGAUGAAG*CGAACG*CG*UAC
- Length
- 22 nucleotides
- Bulged bases
- 9SYR|1|L3|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9SYR_001 not in the Motif Atlas
- Homologous match to J5_8GLP_001
- Geometric discrepancy: 0.0578
- The information below is about J5_8GLP_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.4
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
9SYR|1|L1|G|19
9SYR|1|L1|U|20
9SYR|1|L1|G|21
*
9SYR|1|L3|C|35
9SYR|1|L3|G|36
9SYR|1|L3|A|37
9SYR|1|L3|U|38
9SYR|1|L3|G|39
9SYR|1|L3|A|40
9SYR|1|L3|A|41
9SYR|1|L3|G|42
*
9SYR|1|L3|C|101
9SYR|1|L3|G|102
9SYR|1|L3|A|103
9SYR|1|L3|A|104
9SYR|1|L3|C|105
9SYR|1|L3|G|106
*
9SYR|1|L3|C|113
9SYR|1|L3|G|114
*
9SYR|1|L3|U|136
9SYR|1|L3|A|137
9SYR|1|L3|C|138
Current chains
- Chain L1
- 28S rRNA
- Chain L3
- 5.8S rRNA
Nearby chains
- Chain LA
- Large ribosomal subunit protein eL37
- Chain LC
- 60S ribosomal protein L39
- Chain LH
- 60S ribosomal protein L15
- Chain Lo
- 60S ribosomal protein L23a
- Chain Ly
- 60S ribosomal protein L35
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