J5_9T4R_002
3D structure
- PDB id
- 9T4R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S initiation complex with a natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9T4R|1|A|A|108, 9T4R|1|A|C|360
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9T4R_002 not in the Motif Atlas
- Homologous match to J5_6CZR_021
- Geometric discrepancy: 0.1223
- The information below is about J5_6CZR_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.5
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9T4R|1|A|C|59
9T4R|1|A|A|60
9T4R|1|A|A|61
9T4R|1|A|G|62
*
9T4R|1|A|C|105
9T4R|1|A|G|106
9T4R|1|A|G|107
9T4R|1|A|A|108
9T4R|1|A|C|109
9T4R|1|A|G|110
9T4R|1|A|G|111
9T4R|1|A|G|112
*
9T4R|1|A|C|322
9T4R|1|A|A|323
9T4R|1|A|C|324
*
9T4R|1|A|G|345
9T4R|1|A|A|346
9T4R|1|A|C|347
*
9T4R|1|A|G|358
9T4R|1|A|G|359
9T4R|1|A|C|360
9T4R|1|A|A|361
9T4R|1|A|G|362
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain P
- Small ribosomal subunit protein bS16
- Chain T
- Small ribosomal subunit protein bS20
- Chain U
- Large ribosomal subunit protein uL14
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