J5_9T4R_003

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

9T4R|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9T4R_003 not in the Motif Atlas

Homologous match to J5_8B0X_004

Geometric discrepancy: 0.0491

The information below is about J5_8B0X_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.3

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9T4R|1|a|C|47
9T4R|1|a|G|48
9T4R|1|a|A|49
9T4R|1|a|U|50
9T4R|1|a|G|51
9T4R|1|a|A|52
9T4R|1|a|A|53
9T4R|1|a|G|54
*
9T4R|1|a|C|115
9T4R|1|a|G|116
9T4R|1|a|A|117
9T4R|1|a|A|118
9T4R|1|a|U|119
9T4R|1|a|G|120
*
9T4R|1|a|C|129
9T4R|1|a|A|130
*
9T4R|1|a|U|149
9T4R|1|a|A|150
9T4R|1|a|U|151
*
9T4R|1|a|A|178
9T4R|1|a|A|179
9T4R|1|a|G|180

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34