J5_9T4R_009
3D structure
- PDB id
- 9T4R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S initiation complex with a natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 9T4R|1|a|U|2101, 9T4R|1|a|G|2453, 9T4R|1|a|G|2454, 9T4R|1|a|A|2455, 9T4R|1|a|U|2456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9T4R_009 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.1
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9T4R|1|a|U|2099
9T4R|1|a|U|2100
9T4R|1|a|U|2101
9T4R|1|a|A|2102
*
9T4R|1|a|U|2268
9T4R|1|a|U|2269
9T4R|1|a|U|2270
9T4R|1|a|G|2271
*
9T4R|1|a|C|2283
9T4R|1|a|G|2284
*
9T4R|1|a|C|2306
9T4R|1|a|G|2307
*
9T4R|1|a|C|2452
9T4R|1|a|G|2453
9T4R|1|a|G|2454
9T4R|1|a|A|2455
9T4R|1|a|U|2456
9T4R|1|a|A|2457
9T4R|1|a|A|2458
9T4R|1|a|A|2459
9T4R|1|a|A|2460
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL35
- Chain c
- Large ribosomal subunit protein uL2
- Chain k
- Large ribosomal subunit protein uL15
- Chain v
- Large ribosomal subunit protein bL27
- Chain w
- Large ribosomal subunit protein bL28
Coloring options: