J5_9T6M_005

3D structure

PDB id

9T6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from delta-10 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

CAG*CGUAC*GGG*CA*UG

Length

15 nucleotides

Bulged bases

9T6M|1|a|A|532, 9T6M|1|a|U|562

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9T6M|1|a|C|531
9T6M|1|a|A|532
9T6M|1|a|G|533
*
9T6M|1|a|C|560
9T6M|1|a|G|561
9T6M|1|a|U|562
9T6M|1|a|A|563
9T6M|1|a|C|564
*
9T6M|1|a|G|577
9T6M|1|a|G|578
9T6M|1|a|G|579
*
9T6M|1|a|C|1261
9T6M|1|a|A|1262
*
9T6M|1|a|U|2017
9T6M|1|a|G|2018

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain p

Large ribosomal subunit protein bL20

Chain q

Large ribosomal subunit protein bL21

Chain r

Large ribosomal subunit protein uL22

Chain z

Large ribosomal subunit protein bL32