J5_9TZ9_004
3D structure
- PDB id
- 9TZ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Empty 50S Subunit of the Coxiella burnetii Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- GCAAAAUGG*CG*UU*GAUACCAGG*CGC
- Length
- 25 nucleotides
- Bulged bases
- 9TZ9|1|a|U|1772, 9TZ9|1|a|G|1777
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9TZ9_004 not in the Motif Atlas
- Homologous match to J5_7A0S_005
- Geometric discrepancy: 0.2514
- The information below is about J5_7A0S_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.2
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
9TZ9|1|a|G|1689
9TZ9|1|a|C|1690
9TZ9|1|a|A|1691
9TZ9|1|a|A|1692
9TZ9|1|a|A|1693
9TZ9|1|a|A|1694
9TZ9|1|a|U|1695
9TZ9|1|a|G|1696
9TZ9|1|a|G|1697
*
9TZ9|1|a|C|1721
9TZ9|1|a|G|1722
*
9TZ9|1|a|U|1765
9TZ9|1|a|U|1766
*
9TZ9|1|a|G|1770
9TZ9|1|a|A|1771
9TZ9|1|a|U|1772
9TZ9|1|a|A|1773
9TZ9|1|a|C|1774
9TZ9|1|a|C|1775
9TZ9|1|a|A|1776
9TZ9|1|a|G|1777
9TZ9|1|a|G|1778
*
9TZ9|1|a|C|2004
9TZ9|1|a|G|2005
9TZ9|1|a|C|2006
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain c
- Large ribosomal subunit protein bL19
- Chain d
- Large ribosomal subunit protein uL3
- Chain x
- Large ribosomal subunit protein uL14
Coloring options: