J5_9TZE_005
3D structure
- PDB id
- 9TZE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S Coxiella burnetii Ribosome with Doxycycline and HPFcold
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- CAG*CGUAC*GGG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 9TZE|1|a|A|537, 9TZE|1|a|U|569
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9TZE_005 not in the Motif Atlas
- Homologous match to J5_7A0S_003
- Geometric discrepancy: 0.1709
- The information below is about J5_7A0S_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9TZE|1|a|C|536
9TZE|1|a|A|537
9TZE|1|a|G|538
*
9TZE|1|a|C|567
9TZE|1|a|G|568
9TZE|1|a|U|569
9TZE|1|a|A|570
9TZE|1|a|C|571
*
9TZE|1|a|G|584
9TZE|1|a|G|585
9TZE|1|a|G|586
*
9TZE|1|a|C|1271
9TZE|1|a|A|1272
*
9TZE|1|a|U|2033
9TZE|1|a|G|2034
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain e
- Large ribosomal subunit protein bL20
- Chain h
- Large ribosomal subunit protein bL21
- Chain j
- Large ribosomal subunit protein uL22
- Chain v
- Large ribosomal subunit protein bL32
- Chain w
- Large ribosomal subunit protein uL4
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