J5_9TZE_007
3D structure
- PDB id
- 9TZE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S Coxiella burnetii Ribosome with Doxycycline and HPFcold
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- GCAAAAUGG*CG*UU*GAUACCAGG*CGC
- Length
- 25 nucleotides
- Bulged bases
- 9TZE|1|a|U|1772, 9TZE|1|a|G|1777
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9TZE_007 not in the Motif Atlas
- Homologous match to J5_7A0S_005
- Geometric discrepancy: 0.2517
- The information below is about J5_7A0S_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.2
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
9TZE|1|a|G|1689
9TZE|1|a|C|1690
9TZE|1|a|A|1691
9TZE|1|a|A|1692
9TZE|1|a|A|1693
9TZE|1|a|A|1694
9TZE|1|a|U|1695
9TZE|1|a|G|1696
9TZE|1|a|G|1697
*
9TZE|1|a|C|1721
9TZE|1|a|G|1722
*
9TZE|1|a|U|1765
9TZE|1|a|U|1766
*
9TZE|1|a|G|1770
9TZE|1|a|A|1771
9TZE|1|a|U|1772
9TZE|1|a|A|1773
9TZE|1|a|C|1774
9TZE|1|a|C|1775
9TZE|1|a|A|1776
9TZE|1|a|G|1777
9TZE|1|a|G|1778
*
9TZE|1|a|C|2004
9TZE|1|a|G|2005
9TZE|1|a|C|2006
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain c
- Large ribosomal subunit protein bL19
- Chain d
- Large ribosomal subunit protein uL3
- Chain x
- Large ribosomal subunit protein uL14
Coloring options: