J5_9UZK_003

3D structure

PDB id

9UZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S with initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CAUG*CGAAUGGC*GAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

9UZK|1|2|U|55, 9UZK|1|2|A|92, 9UZK|1|2|C|462

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZK|1|2|C|53
9UZK|1|2|A|54
9UZK|1|2|U|55
9UZK|1|2|G|56
*
9UZK|1|2|C|89
9UZK|1|2|G|90
9UZK|1|2|A|91
9UZK|1|2|A|92
9UZK|1|2|U|93
9UZK|1|2|G|94
9UZK|1|2|G|95
9UZK|1|2|C|96
*
9UZK|1|2|G|424
9UZK|1|2|A|425
9UZK|1|2|G|426
*
9UZK|1|2|C|447
9UZK|1|2|A|448
9UZK|1|2|C|449
*
9UZK|1|2|G|460
9UZK|1|2|G|461
9UZK|1|2|C|462
9UZK|1|2|A|463
9UZK|1|2|G|464

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS4

Chain I

Small ribosomal subunit protein eS6

Chain K

Small ribosomal subunit protein eS8

Chain a

40S ribosomal protein S24