J5_9W0N_001
3D structure
- PDB id
- 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAUGAAG*CGAAUG*CA*UAU*AGG
- Length
- 22 nucleotides
- Bulged bases
- 9W0N|1|1|U|50
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9W0N_001 not in the Motif Atlas
- Homologous match to J5_8B0X_004
- Geometric discrepancy: 0.0918
- The information below is about J5_8B0X_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.3
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
9W0N|1|1|C|47
9W0N|1|1|G|48
9W0N|1|1|A|49
9W0N|1|1|U|50
9W0N|1|1|G|51
9W0N|1|1|A|52
9W0N|1|1|A|53
9W0N|1|1|G|54
*
9W0N|1|1|C|116
9W0N|1|1|G|117
9W0N|1|1|A|118
9W0N|1|1|A|119
9W0N|1|1|U|120
9W0N|1|1|G|121
*
9W0N|1|1|C|130
9W0N|1|1|A|131
*
9W0N|1|1|U|148
9W0N|1|1|A|149
9W0N|1|1|U|150
*
9W0N|1|1|A|176
9W0N|1|1|G|177
9W0N|1|1|G|178
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain D
- Large ribosomal subunit protein bL34
Coloring options: