J5_9WNQ_003

3D structure

PDB id

9WNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

9WNQ|1|A|A|109, 9WNQ|1|A|C|352, 9WNQ|1|A|A|353

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9WNQ_003 not in the Motif Atlas

Homologous match to J5_6CZR_021

Geometric discrepancy: 0.2024

The information below is about J5_6CZR_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.5

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9WNQ|1|A|C|58
9WNQ|1|A|A|59
9WNQ|1|A|A|60
9WNQ|1|A|G|61
*
9WNQ|1|A|C|106
9WNQ|1|A|G|107
9WNQ|1|A|G|108
9WNQ|1|A|A|109
9WNQ|1|A|C|110
9WNQ|1|A|G|111
9WNQ|1|A|G|112
9WNQ|1|A|G|113
*
9WNQ|1|A|C|314
9WNQ|1|A|A|315
9WNQ|1|A|C|316
*
9WNQ|1|A|G|337
9WNQ|1|A|A|338
9WNQ|1|A|C|339
*
9WNQ|1|A|G|350
9WNQ|1|A|G|351
9WNQ|1|A|C|352
9WNQ|1|A|A|353
9WNQ|1|A|G|354

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20

Chain l

50S ribosomal protein L14