J5_9WW4_006
3D structure
- PDB id
- 9WW4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome non-rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- CUUG(PSU)*AAAUAAC*GGAAUG*CCAU*AUA(OMG)
- Length
- 26 nucleotides
- Bulged bases
- 9WW4|1|BA|C|593
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9WW4_006 not in the Motif Atlas
- Homologous match to J5_9PN5_007
- Geometric discrepancy: 0.1095
- The information below is about J5_9PN5_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_04786.3
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9WW4|1|BA|C|30
9WW4|1|BA|U|31
9WW4|1|BA|U|32
9WW4|1|BA|G|33
9WW4|1|BA|PSU|34
*
9WW4|1|BA|A|521
9WW4|1|BA|A|522
9WW4|1|BA|A|523
9WW4|1|BA|U|524
9WW4|1|BA|A|525
9WW4|1|BA|A|526
9WW4|1|BA|C|527
*
9WW4|1|BA|G|558
9WW4|1|BA|G|559
9WW4|1|BA|A|560
9WW4|1|BA|A|561
9WW4|1|BA|U|562
9WW4|1|BA|G|563
*
9WW4|1|BA|C|592
9WW4|1|BA|C|593
9WW4|1|BA|A|594
9WW4|1|BA|U|595
*
9WW4|1|BA|A|641
9WW4|1|BA|U|642
9WW4|1|BA|A|643
9WW4|1|BA|OMG|644
Current chains
- Chain BA
- 18S rRNA (1740-MER)
Nearby chains
- Chain BQ
- 40S ribosomal protein S23
- Chain BX
- 40S ribosomal protein S9
- Chain Bf
- Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein
Coloring options: