J5_9Y79_004

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

9Y79|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9Y79_004 not in the Motif Atlas

Homologous match to J5_8B0X_004

Geometric discrepancy: 0.0732

The information below is about J5_8B0X_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.3

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9Y79|1|a|C|47
9Y79|1|a|G|48
9Y79|1|a|A|49
9Y79|1|a|U|50
9Y79|1|a|G|51
9Y79|1|a|A|52
9Y79|1|a|A|53
9Y79|1|a|G|54
*
9Y79|1|a|C|116
9Y79|1|a|G|117
9Y79|1|a|A|118
9Y79|1|a|A|119
9Y79|1|a|U|120
9Y79|1|a|G|121
*
9Y79|1|a|C|130
9Y79|1|a|A|131
*
9Y79|1|a|U|148
9Y79|1|a|A|149
9Y79|1|a|U|150
*
9Y79|1|a|A|176
9Y79|1|a|G|177
9Y79|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34