J6_4IOA_001

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GC*GGAAC*GGAGAAGAAAG*CGAUU*AUCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

4IOA|1|X|A|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J6_82871.1

Basepair signature

cWW-cSS-cWW-cSS-tHW-F-F-F-F-cWW-cSS-cSS-cWW-tHW-F-cWW-tWW-F-tWW-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4IOA|1|X|G|44
4IOA|1|X|C|45
*
4IOA|1|X|G|156
4IOA|1|X|G|157
4IOA|1|X|A|158
4IOA|1|X|A|159
4IOA|1|X|C|160
*
4IOA|1|X|G|191
4IOA|1|X|G|192
4IOA|1|X|A|193
4IOA|1|X|G|194
4IOA|1|X|A|195
4IOA|1|X|A|196
4IOA|1|X|G|197
4IOA|1|X|A|198
4IOA|1|X|A|199
4IOA|1|X|A|200
4IOA|1|X|G|201
*
4IOA|1|X|C|208
4IOA|1|X|G|209
4IOA|1|X|A|210
4IOA|1|X|U|211
4IOA|1|X|U|212
*
4IOA|1|X|A|239
4IOA|1|X|U|240
4IOA|1|X|C|241
4IOA|1|X|A|242
4IOA|1|X|G|243
*
4IOA|1|X|C|439
4IOA|1|X|U|440
4IOA|1|X|A|441
4IOA|1|X|A|442
4IOA|1|X|A|443
4IOA|1|X|U|444
4IOA|1|X|A|445
4IOA|1|X|C|446

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34