J6_4Y4O_003

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

4Y4O|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J6_45299.1

Basepair signature

cWW-cSS-cSS-cWW-cSS-tHW-F-F-F-F-cWW-cSS-cSS-cWW-tHW-tHS-cWW-tWW-tWW-F-tHS-tSS-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

4Y4O|1|2A|G|44
4Y4O|1|2A|C|45
*
4Y4O|1|2A|G|179
4Y4O|1|2A|G|180
4Y4O|1|2A|A|181
4Y4O|1|2A|A|182
4Y4O|1|2A|C|183
*
4Y4O|1|2A|G|214
4Y4O|1|2A|G|215
4Y4O|1|2A|A|216
4Y4O|1|2A|G|217
4Y4O|1|2A|A|218
4Y4O|1|2A|G|219
4Y4O|1|2A|G|220
4Y4O|1|2A|A|221
4Y4O|1|2A|A|222
4Y4O|1|2A|A|223
4Y4O|1|2A|G|224
*
4Y4O|1|2A|C|231
4Y4O|1|2A|G|232
4Y4O|1|2A|A|233
4Y4O|1|2A|C|234
4Y4O|1|2A|U|235
*
4Y4O|1|2A|A|262
4Y4O|1|2A|C|263
4Y4O|1|2A|C|264
4Y4O|1|2A|A|265
4Y4O|1|2A|G|266
*
4Y4O|1|2A|C|426
4Y4O|1|2A|U|427
4Y4O|1|2A|A|428
4Y4O|1|2A|A|429
4Y4O|1|2A|G|430
4Y4O|1|2A|U|431
4Y4O|1|2A|A|432
4Y4O|1|2A|C|433

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34