Motif J6_45299.1 Version J6_45299.1 of this group appears in releases 3.3 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | break | 18 | 19 | 20 | 21 | 22 | break | 23 | 24 | 25 | 26 | 27 | break | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 1-5 | 1-35 | 2-3 | 6-9 | 6-35 | 7-8 | 7-34 | 8-10 | 10-33 | 13-21 | 14-20 | 15-29 | 16-19 | 17-18 | 20-31 | 21-24 | 21-32 | 22-23 | 24-31 | 26-29 | 27-28 | |||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J6_5J7L_003 | 5J7L | 0.1913 | 1 | DA | LSU rRNA | G | 45 | G | 46 | * | C | 179 | G | 180 | A | 181 | A | 182 | C | 183 | * | G | 214 | G | 215 | A | 216 | A | 217 | A | 218 | A | 219 | G | 220 | A | 221 | A | 222 | U | 224 | * | A | 231 | G | 232 | A | 233 | U | 234 | U | 235 | * | A | 262 | G | 263 | C | 264 | A | 265 | G | 266 | * | C | 426 | U | 427 | A | 428 | A | 429 | A | 430 | U | 431 | A | 432 | C | 433 | ntSW | cWW | cWW | cWW | csS | cWW | cSs | ncsS | tHW | csS | cSs | tHW | tHS | cWW | tWW | ntHS | tWW | cWW | ncSs | tSs | cWW |
| 2 | J6_4WF9_001 | 4WF9 | 0.1734 | 2 | X | LSU rRNA | G | 45 | C | 46 | * | G | 181 | C | 182 | A | 183 | A | 185 | C | 186 | * | G | 217 | G | 218 | A | 219 | A | 220 | G | 221 | A | 222 | G | 223 | A | 224 | A | 225 | G | 227 | * | C | 234 | G | 235 | A | 236 | U | 237 | U | 238 | * | A | 265 | A | 266 | G | 267 | A | 268 | G | 269 | * | C | 472 | U | 473 | A | 474 | A | 475 | A | 476 | U | 477 | A | 478 | C | 479 | tSW | cWW | cWW | cWW | csS | cWW | cSs | ncsS | tHW | csS | cSs | tHW | ntHS | cWW | tWW | tHS | tWW | cWW | ncSs | ntHS | cWW |
| 3 | J6_4Y4O_003 | 4Y4O | 0.0000 | 1 | 2A | LSU rRNA | G | 44 | C | 45 | * | G | 179 | G | 180 | A | 181 | A | 182 | C | 183 | * | G | 214 | G | 215 | A | 216 | G | 217 | A | 218 | G | 219 | G | 220 | A | 221 | A | 222 | G | 224 | * | C | 231 | G | 232 | A | 233 | C | 234 | U | 235 | * | A | 262 | C | 263 | C | 264 | A | 265 | G | 266 | * | C | 426 | U | 427 | A | 428 | A | 429 | G | 430 | U | 431 | A | 432 | C | 433 | cWW | cWW | cWW | csS | cWW | cSs | csS | tHW | csS | cSs | tHW | tHS | cWW | tWW | tWW | cWW | ncSs | tSs | cWW | ||
| 4 | J6_4V9F_001 | 4V9F | 0.1082 | 1 | 0 | LSU rRNA | G | 41 | C | 42 | * | G | 149 | G | 150 | A | 151 | A | 152 | C | 153 | * | G | 184 | G | 185 | A | 186 | A | 187 | C | 188 | A | 189 | G | 190 | A | 191 | A | 192 | A | 194 | * | U | 202 | G | 203 | A | 204 | U | 205 | G | 206 | * | U | 233 | A | 234 | C | 235 | A | 236 | G | 237 | * | C | 433 | U | 434 | A | 435 | A | 436 | A | 437 | C | 438 | A | 439 | C | 440 | cWW | cWW | cWW | csS | cWW | cSs | ncsS | csS | cSs | tHW | tHS | cWW | tWW | ntHS | tWW | cWW | ncSs | tSs | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAGCUAAAUAC | 1 |
| GC*GCACAC*GGAAGAGAAAG*CGAUU*AAGAGCUAAAUAC | 1 |
| GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAGCUAAGUAC | 1 |
| GC*GGAAC*GGAACAGAAAA*UGAUG*UACAGCUAAACAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *GAA*GAAAAGAAA*GAU*GCAUAAAUA | 1 |
| *CACA*GAAGAGAAA*GAU*AGAUAAAUA | 1 |
| *GAA*GAGAGGAAA*GAC*CCAUAAGUA | 1 |
| *GAA*GAACAGAAA*GAU*ACAUAAACA | 1 |
Release history
| Release | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-02-09 | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-cSS-cSS-cWW-cSS-tHW-F-F-F-F-cWW-cSS-cSS-cWW-tHW-tHS-cWW-tWW-tWW-F-tHS-tSS-cWW-cWW-F
- Heat map statistics
- Min 0.11 | Avg 0.12 | Max 0.19
Coloring options: