J6_8OI5_001
3D structure
- PDB id
- 8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GACUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 8OI5|1|1|A|66, 8OI5|1|1|U|329, 8OI5|1|4|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OI5|1|1|G|21
8OI5|1|1|A|22
8OI5|1|1|C|23
8OI5|1|1|U|24
8OI5|1|1|A|25
8OI5|1|1|C|26
*
8OI5|1|1|G|57
8OI5|1|1|G|58
8OI5|1|1|A|59
8OI5|1|1|A|60
8OI5|1|1|A|61
8OI5|1|1|A|62
8OI5|1|1|G|63
8OI5|1|1|A|64
8OI5|1|1|A|65
8OI5|1|1|A|66
8OI5|1|1|C|67
*
8OI5|1|1|G|74
8OI5|1|1|G|75
8OI5|1|1|A|76
8OI5|1|1|U|77
8OI5|1|1|U|78
*
8OI5|1|1|A|105
8OI5|1|1|A|106
8OI5|1|1|A|107
8OI5|1|1|A|108
8OI5|1|1|G|109
*
8OI5|1|1|C|321
8OI5|1|1|U|322
8OI5|1|1|A|323
8OI5|1|1|A|324
8OI5|1|1|A|325
8OI5|1|1|U|326
8OI5|1|1|A|327
8OI5|1|1|U|328
8OI5|1|1|U|329
8OI5|1|1|G|330
8OI5|1|1|G|331
*
8OI5|1|4|C|32
8OI5|1|4|A|33
8OI5|1|4|U|34
8OI5|1|4|C|35
Current chains
- Chain 1
- 25S
- Chain 4
- 5.8S
Nearby chains
- Chain AI
- Ribosomal protein L29
- Chain AJ
- 60S ribosomal protein L36
- Chain AK
- 60S ribosomal protein L37-B
- Chain l
- 60S ribosomal protein L4-B
- Chain t
- 60S ribosomal protein L13
- Chain v
- 60S ribosomal protein L15-A
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