Motif J6_18219.2 Version J6_18219.2 of this group appears in releases 4.7 to 4.7

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3	break		4		5		6		7		8		9	break		10		11		12		13		14		15		16		17		18		19	break		20		21		22		23		24	break		25		26		27		28		29	break		30		31		32		33		34		35		36		37		38		39	1-39	2-38	3-4	7-8	7-9	8-11	8-37	9-10	9-36	10-12	11-37	12-35	15-23	16-22	17-31	18-21	19-20	22-33	23-26	23-34	24-25	26-33	28-31	29-30
1	J6_8OI5_001	8OI5	0.0581	3	4+1	5.8S rRNA	C	32	A	33	C	35	*	G	21	A	22	C	23	U	24	A	25	C	26	*	G	57	G	58	A	59	A	60	A	61	A	62	G	63	A	64	A	65	C	67	*	G	74	G	75	A	76	U	77	U	78	*	A	105	A	106	A	107	A	108	G	109	*	C	321	U	322	A	323	A	324	A	325	U	326	A	327	U	328	G	330	G	331	cWW	cWW	cWW		cSH	cWW	csS	cWW	cSs	ncsS		tHW	csS	cSs	tHW	tHS	cWW	tWW	tHS	tWW	cWW		tSs	cWW
2	J6_9H3G_001	9H3G	0.0000	3	3+A	5.8S rRNA + LSU rRNA	C	36	A	37	C	39	*	G	20	A	21	U	22	U	23	A	24	C	25	*	G	56	G	57	A	58	A	59	A	60	A	61	G	62	A	63	A	64	C	66	*	G	73	G	74	A	75	U	76	U	77	*	A	104	A	105	G	106	A	107	G	108	*	C	318	U	319	A	320	A	321	A	322	U	323	A	324	C	325	G	327	G	328	cWW	cWW	cWW	ncSH	ncSH	cWW	csS	cWW	cSs	ncsS	ntSs	tHW	csS	cSs	tHW	tHS	cWW	tWW	tHS	tWW	cWW		tSs	cWW
3	J6_9AXU_001	9AXU	0.0816	3	4+2	5.8S rRNA	C	40	A	41	C	43	*	G	22	A	23	C	24	U	25	A	26	C	27	*	G	58	G	59	A	60	A	61	A	62	A	63	G	64	A	65	A	66	A	68	*	U	75	G	76	A	77	U	78	U	79	*	A	106	A	107	A	108	A	109	G	110	*	C	329	U	330	A	331	A	332	A	333	U	334	A	335	U	336	G	338	G	339	cWW	cWW	cWW		cSH	cWW	csS	cWW	cSs	ncsS		tHW	csS	cSs	tHW	tHS	cWW	tWW	tHS	tWW	cWW		tSs	cWW
4	J6_8P9A_003	8P9A	0.0912	3	AT+AR	5.8S rRNA	C	32	A	33	C	35	*	G	22	A	23	G	24	U	25	A	26	C	27	*	G	58	G	59	A	60	A	61	A	62	A	63	G	64	A	65	A	66	C	68	*	G	75	G	76	A	77	U	78	U	79	*	A	106	A	107	A	108	A	109	G	110	*	C	321	U	322	A	323	A	324	A	325	U	326	A	327	U	328	G	330	G	331	cWW	cWW	cWW			cWW	csS	cWW	cSs	ncsS		tHW	csS	cSs	tHW	tHS	cWW	tWW	ntHS	tWW	cWW	ncSs	tSs	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GACUACGGAAAAGAAACGGAUUAAAAGCUAAAUAUUGGCAUC	1
CAUCGAUUACGGAAAAGAAACGGAUUAAGAGCUAAAUACGGG	1
GACUACGGAAAAGAAAAUGAUUAAAAGCUAAAUAUUGGCAUC	1
GAGUACGGAAAAGAAACGGAUUAAAAGCUAAAUAUUGGCAUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
ACUAGAAAAGAAAGAUAAAUAAAUAUUGAU	2
AUAUUAGAAAAGAAAGAUAGAUAAAUACGG	1
AGUAGAAAAGAAAGAUAAAUAAAUAUUGAU	1

Release history

Release	4.7
Date	2026-02-25
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (4)
Basepair signature: cWW-cWW-cWW-cSS-cSS-F-tHW-F-tWW-cSH-tWW-cWW-F-cWW-tSS-tHW-cWW-F-F-F-tHS-cSS-cWW-cSS-tHS-cWW
Heat map statistics: Min 0.06 | Avg 0.06 | Max 0.09

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Coloring options: Nucleotide numbers

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