Motif HL_00206.1 Version HL_00206.1 of this group appears in releases 3.85 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3D2V_002 | 3D2V | 0.7644 | 4 | T-loop related | A | TPP riboswitch (THI element) | G | 54 | G | 55 | U | 56 | C | 61 | cWW |
| 2 | HL_5UD5_001 | 5UD5 | 0.3753 | 3 | C | tRNA | C | 13 | A | 14 | U | 15 | G | 21 | cWW | |
| 3 | HL_6D12_002 | 6D12 | 0.3410 | 3 | C | human 7SK RNA stem-loop 4 | C | 328 | A | 329 | U | 330 | G | 334 | cWW | |
| 4 | HL_7TZS_002 | 7TZS | 0.6711 | 4 | T-loop related | X | TPP riboswitch (THI element) | G | 66 | A | 67 | U | 68 | C | 73 | cWW |
| 5 | HL_3K0J_002 | 3K0J | 0.6811 | 4 | T-loop related | E | RNA (87-MER) | G | 66 | A | 67 | U | 68 | C | 73 | cWW |
| 6 | HL_2ZZN_004 | 2ZZN | 0.1727 | 5 | D | RNA (71-MER) | U | 13 | A | 14 | G | 15 | A | 22 | cWW | |
| 7 | HL_6UFM_001 | 6UFM | 0.0000 | 7 | A | tRNA | C | 13 | A | 14 | G | 15 | G | 23 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUAAUGC | 2 |
| GGUAAUGC | 1 |
| CAUGUAG | 1 |
| CAUGUGG | 1 |
| UAGGGGCUA | 1 |
| CAGGCGGUUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUAAUG | 2 |
| GUAAUG | 1 |
| AUGUA | 1 |
| AUGUG | 1 |
| AGGGGCU | 1 |
| AGGCGGUUA | 1 |
- Annotations
-
- (4)
- T-loop related (3)
- Basepair signature
- cWW-F-F
- Heat map statistics
- Min 0.11 | Avg 0.27 | Max 0.76
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