RNA 3D Hub //

Motif HL_00206.1 Version HL_00206.1 of this group appears in releases 3.85 to 3.87

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 41-4
1 HL_3D2V_0023D2V0.76444T-loop relatedATPP riboswitch (THI element)G54G55U56C61cWW
2 HL_5UD5_0015UD50.37533C tRNAC13A14U15G21cWW
3 HL_6D12_0026D120.34103Chuman 7SK RNA stem-loop 4C328A329U330G334cWW
4 HL_7TZS_0027TZS0.67114T-loop relatedXTPP riboswitch (THI element)G66A67U68C73cWW
5 HL_3K0J_0023K0J0.68114T-loop relatedERNA (87-MER)G66A67U68C73cWW
6 HL_2ZZN_0042ZZN0.17275DRNA (71-MER)U13A14G15A22cWW
7 HL_6UFM_0016UFM0.00007A tRNAC13A14G15G23cWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAUAAUGC2
GGUAAUGC1
CAUGUAG1
CAUGUGG1
UAGGGGCUA1
CAGGCGGUUAG1
Non-Watson-Crick part of the motif
SequenceCounts
AUAAUG2
GUAAUG1
AUGUA1
AUGUG1
AGGGGCU1
AGGCGGUUA1

Release history

Release3.853.863.87
Date2024-06-192024-07-172024-08-14
StatusNew id, 1 parentExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (4)
  • T-loop related (3)
    • Basepair signature
    cWW-F-F
    Heat map statistics
    Min 0.11 | Avg 0.27 | Max 0.76
    Help

    Coloring options:

    HL_3D2V_002:HL_3D2V_002 = 0HL_3D2V_002:HL_5UD5_001 = 0.1861HL_3D2V_002:HL_6D12_002 = 0.2144HL_3D2V_002:HL_7TZS_002 = 0.1832HL_3D2V_002:HL_3K0J_002 = 0.1671HL_3D2V_002:HL_2ZZN_004 = 0.496HL_3D2V_002:HL_6UFM_001 = 0.7644HL_5UD5_001:HL_3D2V_002 = 0.1861HL_5UD5_001:HL_5UD5_001 = 0HL_5UD5_001:HL_6D12_002 = 0.1413HL_5UD5_001:HL_7TZS_002 = 0.2333HL_5UD5_001:HL_3K0J_002 = 0.1663HL_5UD5_001:HL_2ZZN_004 = 0.3767HL_5UD5_001:HL_6UFM_001 = 0.3753HL_6D12_002:HL_3D2V_002 = 0.2144HL_6D12_002:HL_5UD5_001 = 0.1413HL_6D12_002:HL_6D12_002 = 0HL_6D12_002:HL_7TZS_002 = 0.1431HL_6D12_002:HL_3K0J_002 = 0.1401HL_6D12_002:HL_2ZZN_004 = 0.3435HL_6D12_002:HL_6UFM_001 = 0.341HL_7TZS_002:HL_3D2V_002 = 0.1832HL_7TZS_002:HL_5UD5_001 = 0.2333HL_7TZS_002:HL_6D12_002 = 0.1431HL_7TZS_002:HL_7TZS_002 = 0HL_7TZS_002:HL_3K0J_002 = 0.1072HL_7TZS_002:HL_2ZZN_004 = 0.3235HL_7TZS_002:HL_6UFM_001 = 0.6711HL_3K0J_002:HL_3D2V_002 = 0.1671HL_3K0J_002:HL_5UD5_001 = 0.1663HL_3K0J_002:HL_6D12_002 = 0.1401HL_3K0J_002:HL_7TZS_002 = 0.1072HL_3K0J_002:HL_3K0J_002 = 0HL_3K0J_002:HL_2ZZN_004 = 0.3071HL_3K0J_002:HL_6UFM_001 = 0.6811HL_2ZZN_004:HL_3D2V_002 = 0.496HL_2ZZN_004:HL_5UD5_001 = 0.3767HL_2ZZN_004:HL_6D12_002 = 0.3435HL_2ZZN_004:HL_7TZS_002 = 0.3235HL_2ZZN_004:HL_3K0J_002 = 0.3071HL_2ZZN_004:HL_2ZZN_004 = 0HL_2ZZN_004:HL_6UFM_001 = 0.1727HL_6UFM_001:HL_3D2V_002 = 0.7644HL_6UFM_001:HL_5UD5_001 = 0.3753HL_6UFM_001:HL_6D12_002 = 0.341HL_6UFM_001:HL_7TZS_002 = 0.6711HL_6UFM_001:HL_3K0J_002 = 0.6811HL_6UFM_001:HL_2ZZN_004 = 0.1727HL_6UFM_001:HL_6UFM_001 = 0HL_3D2V_002HL_5UD5_001HL_6D12_002HL_7TZS_002HL_3K0J_002HL_2ZZN_004HL_6UFM_001Discrepancy0.000.200.400.60
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