Motif HL_00311.1 Version HL_00311.1 of this group appears in releases 1.16 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-9 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2AW7_001 | 2AW7 | 0.2616 | 0 | A | U | 12 | U | 13 | U | 14 | G | 15 | A | 16 | U | 17 | C | 18 | A | 19 | U | 20 | G | 21 | G | 22 | cWW | tHW |
| 2 | HL_1FJG_001 | 1FJG | 0.2613 | 0 | A | U | 12 | U | 13 | U | 14 | G | 15 | A | 16 | U | 17 | C | 18 | C | 19 | U | 20 | G | 21 | G | 22 | cWW | tHW |
| 3 | HL_4CUX_001 | 4CUX | 0.2346 | 0 | 2 | G | 7 | U | 8 | U | 9 | G | 10 | A | 11 | U | 12 | C | 13 | C | 14 | U | 15 | G | 16 | C | 17 | cWW | |
| 4 | HL_3J7A_001 | 3J7A | 0.1044 | 0 | A | G | 7 | U | 8 | U | 9 | G | 10 | A | 11 | U | 12 | C | 13 | U | 14 | U | 15 | G | 16 | C | 17 | cWW | tHW |
| 5 | HL_3U5F_001 | 3U5F | 0.0000 | 0 | 6 | G | 7 | U | 8 | U | 9 | G | 10 | A | 11 | U | 12 | C | 13 | C | 14 | U | 15 | G | 16 | C | 17 | cWW | tHW |
| 6 | HL_4BPP_001 | 4BPP | 0.0907 | 0 | A | G | 7 | U | 8 | U | 9 | G | 10 | A | 11 | U | 12 | C | 13 | C | 14 | U | 15 | G | 16 | C | 17 | cWW | tHW |
| 7 | HL_1VX2_001 | 1VX2 | 0.2150 | 0 | 2 | G | 7 | U | 8 | U | 9 | G | 10 | A | 11 | U | 12 | C | 13 | C | 14 | U | 15 | G | 16 | C | 17 | cWW | ntHW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUGAUCCUGC | 4 |
| UUUGAUCAUGG | 1 |
| UUUGAUCCUGG | 1 |
| GUUGAUCUUGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUGAUCCUG | 5 |
| UUGAUCAUG | 1 |
| UUGAUCUUG | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in HL_00311.1 | Only in the parent motif |
|---|---|---|---|
| HL_31318.2 Compare | HL_4CUX_001, HL_3U5F_001, HL_4BPP_001, HL_1FJG_001 | HL_2AW7_001, HL_1VX2_001, HL_3J7A_001 | HL_1VW3_047, HL_3T4B_003 |
| HL_82622.1 Compare | HL_2AW7_001 | HL_3U5F_001, HL_4BPP_001, HL_4CUX_001, HL_1VX2_001, HL_3J7A_001, HL_1FJG_001 |
Children motifs
| Child motif | Common motif instances | Only in HL_00311.1 | Only in the child motif |
|---|---|---|---|
| HL_00311.2 Compare | HL_3U5F_001, HL_4BPP_001, HL_4CUX_001, HL_3J7A_001, HL_1FJG_001, HL_2AW7_001 | HL_1VX2_001 | HL_4W23_001 |
- Annotations
-
- (7)
- Basepair signature
- cWW-R-tHW-R-R-R-R-R-R
- Heat map statistics
- Min 0.09 | Avg 0.21 | Max 0.37
Coloring options: