Motif HL_01008.3 Version HL_01008.3 of this group appears in releases 3.12 to 3.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2IZN_001 | 2IZN | 0.1192 | 2 | R | RNA (19-mer) | G | 8||||P_1 | A | 9||||P_1 | U | 11||||P_1 | C | 13||||P_1 | cWW |
| 2 | HL_2IZN_005 | 2IZN | 0.1192 | 2 | R | RNA (19-mer) | G | 8||||P_P | A | 9||||P_P | U | 11||||P_P | C | 13||||P_P | |
| 3 | HL_5MSF_005 | 5MSF | 0.0000 | 2 | R | RNA (18-mer) | G | 7||||P_P | A | 8||||P_P | C | 10||||P_P | C | 12||||P_P | |
| 4 | HL_5MSF_001 | 5MSF | 0.0000 | 2 | R | RNA (18-mer) | G | 7||||P_1 | A | 8||||P_1 | C | 10||||P_1 | C | 12||||P_1 | cWW |
| 5 | HL_1U1Y_005 | 1U1Y | 0.0674 | 2 | R | RNA (17-mer) | G | 7||||P_P | A | 8||||P_P | C | 10||||P_P | C | 12||||P_P | |
| 6 | HL_1U1Y_001 | 1U1Y | 0.0674 | 2 | R | RNA (17-mer) | G | 7||||P_1 | A | 8||||P_1 | C | 10||||P_1 | C | 12||||P_1 | cWW |
| 7 | HL_7MSF_005 | 7MSF | 0.1557 | 2 | R | RNA (14-mer) | C | 5||||P_P | A | 6||||P_P | C | 8||||P_P | G | 10||||P_P | |
| 8 | HL_7MSF_001 | 7MSF | 0.1557 | 2 | R | RNA (14-mer) | C | 5||||P_1 | A | 6||||P_1 | C | 8||||P_1 | G | 10||||P_1 | cWW |
| 9 | HL_4V88_197 | 4V88 | 0.4901 | 3 | A6 | SSU rRNA | U | 450 | A | 451 | U | 453 | A | 456 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUCAC | 4 |
| GAUUAC | 2 |
| CAACAG | 2 |
| UAAUUCA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUCA | 4 |
| AUUA | 2 |
| AACA | 2 |
| AAUUC | 1 |
Release history
| Release | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 |
|---|---|---|---|---|---|---|---|
| Date | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
Coloring options: