Motif HL_01008.4 Version HL_01008.4 of this group appears in releases 3.19 to 3.61
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-3 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6CZR_102 | 6CZR | 0.9009 | 1 | 1a | SSU rRNA | C | 1430 | U | 1431 | A | 1432 | C | 1433 | G | 1435 | ntSH | cWW | |
| 2 | HL_2IZN_001 | 2IZN | 0.1797 | 1 | R | RNA (19-mer) | G | 8||||P_1 | A | 9||||P_1 | U | 10||||P_1 | U | 11||||P_1 | C | 13||||P_1 | cWW | ||
| 3 | HL_2IZN_005 | 2IZN | 0.1797 | 1 | R | RNA (19-mer) | G | 8||||P_P | A | 9||||P_P | U | 10||||P_P | U | 11||||P_P | C | 13||||P_P | cWW | ||
| 4 | HL_1U1Y_001 | 1U1Y | 0.0797 | 1 | R | RNA (17-mer) | G | 7||||P_1 | A | 8||||P_1 | U | 9||||P_1 | C | 10||||P_1 | C | 12||||P_1 | cWW | ||
| 5 | HL_1U1Y_005 | 1U1Y | 0.0797 | 1 | R | RNA (17-mer) | G | 7||||P_P | A | 8||||P_P | U | 9||||P_P | C | 10||||P_P | C | 12||||P_P | cWW | ||
| 6 | HL_5MSF_005 | 5MSF | 0.0000 | 1 | R | RNA (18-mer) | G | 7||||P_P | A | 8||||P_P | U | 9||||P_P | C | 10||||P_P | C | 12||||P_P | cWW | ||
| 7 | HL_5MSF_001 | 5MSF | 0.0000 | 1 | R | RNA (18-mer) | G | 7||||P_1 | A | 8||||P_1 | U | 9||||P_1 | C | 10||||P_1 | C | 12||||P_1 | cWW | ||
| 8 | HL_7MSF_005 | 7MSF | 0.2456 | 1 | R | RNA (14-mer) | C | 5||||P_P | A | 6||||P_P | A | 7||||P_P | C | 8||||P_P | G | 10||||P_P | cWW | ||
| 9 | HL_7MSF_001 | 7MSF | 0.2456 | 1 | R | RNA (14-mer) | C | 5||||P_1 | A | 6||||P_1 | A | 7||||P_1 | C | 8||||P_1 | G | 10||||P_1 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUCAC | 4 |
| GAUUAC | 2 |
| CAACAG | 2 |
| CUACGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUCA | 4 |
| AUUA | 2 |
| AACA | 2 |
| UACG | 1 |
Release history
| Release | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
Coloring options: