Motif HL_01672.1 Version HL_01672.1 of this group appears in releases 0.1 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3PYO_030 | 3PYO | 0.8582 | 0 | A | 23S ribosomal RNA | G | 1171 | G | 1173 | A | 1174 | U | 1175 | G | 1176 | A | 1177 | C | 1178 | cWW | ncSW |
| 2 | HL_2QBG_063 | 2QBG | 0.0000 | 1 | B | 23S rRNA | U | 2528 | A | 2530 | A | 2531 | G | 2532 | U | 2533 | A | 2534 | G | 2535 | cWW | |
| 3 | HL_3PYO_061 | 3PYO | 0.1650 | 1 | A | 23S ribosomal RNA | U | 2528 | A | 2530 | A | 2531 | G | 2532 | A | 2533 | A | 2534 | G | 2535 | cWW | |
| 4 | HL_1S72_063 | 1S72 | 0.2021 | 1 | 0 | LSU rRNA | U | 2563 | C | 2565 | A | 2566 | G | 2567 | A | 2568 | A | 2569 | G | 2570 | cWW | |
| 5 | HL_2ZJR_059 | 2ZJR | 0.2229 | 1 | X | LSU rRNA | U | 2507 | A | 2509 | A | 2510 | G | 2511 | A | 2512 | A | 2513 | G | 2514 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAGAAG | 2 |
| GGAUGAC | 1 |
| UGAAGUAG | 1 |
| UGCAGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAGAA | 2 |
| GAUGA | 1 |
| GAAGUA | 1 |
| GCAGAA | 1 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_01672.1 | Only in the child motif |
|---|---|---|---|
| HL_39942.1 Compare | HL_2ZJR_059, HL_2QBG_063, HL_1S72_063 | HL_3PYO_030, HL_3PYO_061 | HL_4A1B_062, HL_3V2F_059, HL_3U5H_063 |
Coloring options: