Motif HL_39942.1 Version HL_39942.1 of this group appears in releases 0.3 to 1.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7	1-7
1	HL_3U5H_063	3U5H	0.5003	1	5	25S rRNA	A	2897	C	2899	A	2900	G	2901	A	2902	A	2903	U	2904	cWW
2	HL_4A1B_062	4A1B	0.2714	1	1	26S RRNA	A	2885	C	2887	A	2888	G	2889	A	2890	A	2891	U	2892	cWW
3	HL_2QBG_063	2QBG	0.1356	1	B	23S rRNA	U	2528	A	2530	A	2531	G	2532	U	2533	A	2534	G	2535	cWW
4	HL_3V2F_059	3V2F	0.0000	1	A	23S Ribosomal RNA	U	2528	A	2530	A	2531	G	2532	A	2533	A	2534	G	2535	cWW
5	HL_2ZJR_059	2ZJR	0.1541	1	X	LSU rRNA	U	2507	A	2509	A	2510	G	2511	A	2512	A	2513	G	2514	cWW
6	HL_1S72_063	1S72	0.1873	1	0	LSU rRNA	U	2563	C	2565	A	2566	G	2567	A	2568	A	2569	G	2570	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
AGCAGAAU	2
UGAAGAAG	2
UGAAGUAG	1
UGCAGAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GCAGAA	3
GAAGAA	2
GAAGUA	1

Release history

Release	0.3	0.4	0.5	0.6	0.7	0.8	1.0
Date	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-03-04
Status	New id, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in HL_39942.1	Only in the parent motif
HL_01672.1 Compare	HL_2ZJR_059, HL_2QBG_063, HL_1S72_063	HL_4A1B_062, HL_3V2F_059, HL_3U5H_063	HL_3PYO_030, HL_3PYO_061

Children motifs

Child motif	Common motif instances	Only in HL_39942.1	Only in the child motif
HL_39942.2 Compare	HL_4A1B_062, HL_1S72_063, HL_3V2F_059, HL_2QBG_063, HL_3U5H_063	HL_2ZJR_059	HL_4IOA_060

Annotations: (6)
Basepair signature: cWW-R-R-R-R
Heat map statistics: Min 0.14 | Avg 0.27 | Max 0.53

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