Motif HL_39942.1 Version HL_39942.1 of this group appears in releases 0.3 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3U5H_063 | 3U5H | 0.5003 | 1 | 5 | LSU rRNA | A | 2897 | C | 2899 | A | 2900 | G | 2901 | A | 2902 | A | 2903 | U | 2904 | cWW | |
| 2 | HL_4A1B_062 | 4A1B | 0.2714 | 1 | 1 | LSU rRNA | A | 2885 | C | 2887 | A | 2888 | G | 2889 | A | 2890 | A | 2891 | U | 2892 | cWW | |
| 3 | HL_2QBG_063 | 2QBG | 0.1356 | 1 | B | LSU rRNA | U | 2528 | A | 2530 | A | 2531 | G | 2532 | U | 2533 | A | 2534 | G | 2535 | cWW | |
| 4 | HL_3V2F_059 | 3V2F | 0.0000 | 1 | A | LSU rRNA | U | 2528 | A | 2530 | A | 2531 | G | 2532 | A | 2533 | A | 2534 | G | 2535 | cWW | |
| 5 | HL_2ZJR_059 | 2ZJR | 0.1541 | 1 | GNRA variation (H) | X | LSU rRNA | U | 2507 | A | 2509 | A | 2510 | G | 2511 | A | 2512 | A | 2513 | G | 2514 | cWW |
| 6 | HL_1S72_063 | 1S72 | 0.1873 | 1 | GNRA variation (H) | 0 | LSU rRNA | U | 2563 | C | 2565 | A | 2566 | G | 2567 | A | 2568 | A | 2569 | G | 2570 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGCAGAAU | 2 |
| UGAAGAAG | 2 |
| UGAAGUAG | 1 |
| UGCAGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCAGAA | 3 |
| GAAGAA | 2 |
| GAAGUA | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 |
|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_39942.1 | Only in the parent motif |
|---|---|---|---|
| HL_01672.1 Compare | HL_2ZJR_059, HL_2QBG_063, HL_1S72_063 | HL_4A1B_062, HL_3V2F_059, HL_3U5H_063 | HL_3PYO_030, HL_3PYO_061 |
Children motifs
| Child motif | Common motif instances | Only in HL_39942.1 | Only in the child motif |
|---|---|---|---|
| HL_39942.2 Compare | HL_4A1B_062, HL_1S72_063, HL_3V2F_059, HL_2QBG_063, HL_3U5H_063 | HL_2ZJR_059 | HL_4IOA_060 |
- Annotations
-
- (4)
- GNRA variation (H) (2)
- Basepair signature
- cWW-R-R-R-R
- Heat map statistics
- Min 0.14 | Avg 0.27 | Max 0.53
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