Motif HL_02255.1 Version HL_02255.1 of this group appears in releases 3.3 to 3.32
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3AL0_001 | 3AL0 | 0.0000 | 4 | tRNA D-loop | E | tRNA | U | 13 | A | 14 | A | 15 | A | 21 | G | 22 | cWW | cWS |
| 2 | HL_5B63_003 | 5B63 | 0.2681 | 6 | tRNA D-loop | D | tRNA | C | 913 | A | 914 | A | 915 | A | 922 | G | 923 | cWW | ncWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAACGGUAG | 1 |
| CAAUUGGAUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AACGGUA | 1 |
| AAUUGGAUA | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA D-loop (2)
- Basepair signature
- cWW-cWS-R
- Heat map statistics
- Min 0.27 | Avg 0.13 | Max 0.27
Coloring options: