Motif HL_05139.1 Version HL_05139.1 of this group appears in releases 0.2 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-3 | 2-8 | 3-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3O30_002 | 3O30 | 0.0000 | 5 | 1 | C | 70 | A | 71 | A | 72 | U | 73 | U | 74 | A | 80 | G | 81 | U | 82 | G | 83 | cWW | ncSH | ncWW | ncWW |
| 2 | HL_1J2B_001 | 1J2B | 0.9986 | 0 | C | C | 932 | C | 933 | U | 934 | U | 935 | A | 936 | C | 937 | G | 938 | A | 939 | G | 940 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAUUUAUACAGUG | 1 |
| CCUUACGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAUUUAUACAGU | 1 |
| CUUACGA | 1 |
Release history
| Release | 0.2 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in HL_05139.1 | Only in the parent motif |
|---|---|---|---|
| HL_07923.1 Compare | HL_3O30_002 | HL_1J2B_001 | HL_1FJG_023 |
| HL_55383.1 Compare | HL_1J2B_001 | HL_3O30_002 |
Children motifs
| Child motif | Common motif instances | Only in HL_05139.1 | Only in the child motif |
|---|---|---|---|
| HL_74465.1 Compare | HL_1J2B_001 | HL_3O30_002 | HL_2AZX_002, HL_1U0B_002, HL_2AKE_002, HL_3L0U_002, HL_1J1U_002, HL_3TUP_002, HL_2ZNI_002, HL_2CV1_005, HL_1EIY_002, HL_1J2B_003 |
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