Motif HL_05568.1 Version HL_05568.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5AN9_021 | 5AN9 | 0.3900 | 0 | N | LSU rRNA | C | 3173 | G | 3174 | C | 3175 | U | 3176 | C | 3177 | A | 3178 | U | 3179 | A | 3180 | G | 3181 | cWW | tSH |
| 2 | HL_3J9W_096 | 3J9W | 0.3171 | 0 | BA | LSU rRNA | A | 2500 | G | 2501 | U | 2502 | C | 2503 | C | 2504 | A | 2505 | C | 2506 | A | 2507 | U | 2508 | cWW | tSH |
| 3 | HL_4V19_033 | 4V19 | 0.1913 | 0 | A | LSU rRNA | A | 1292 | G | 1293 | U | 1294 | U | 1295 | C | 1296 | C | 1297 | U | 1298 | A | 1299 | U | 1300 | cWW | tSH |
| 4 | HL_4V8P_221 | 4V8P | 0.1158 | 0 | F1 | LSU rRNA | A | 2828 | G | 2829 | U | 2830 | U | 2831 | C | 2832 | A | 2833 | U | 2834 | A | 2835 | U | 2836 | cWW | tSH |
| 5 | HL_5J7L_193 | 5J7L | 0.0000 | 0 | DA | LSU rRNA | A | 2471 | G | 2472 | U | 2473 | U | 2474 | C | 2475 | A | 2476 | U | 2477 | A | 2478 | U | 2479 | cWW | tSH |
| 6 | HL_4IOA_059 | 4IOA | 0.1421 | 0 | X | LSU rRNA | A | 2450 | G | 2451 | U | 2452 | C | 2453 | C | 2454 | A | 2455 | U | 2456 | A | 2457 | U | 2458 | cWW | tSH |
| 7 | HL_5FDU_059 | 5FDU | 0.1557 | 0 | 1A | LSU rRNA | C | 2483 | G | 2484 | U | 2485 | C | 2486 | C | 2487 | A | 2488 | C | 2489 | A | 2490 | G | 2491 | cWW | tSH |
| 8 | HL_4V88_175 | 4V88 | 0.1421 | 0 | A5 | LSU rRNA | C | 2840 | G | 2841 | U | 2842 | U | 2843 | C | 2844 | A | 2845 | U | 2846 | A | 2847 | G | 2848 | cWW | tSH |
| 9 | HL_5AJ0_065 | 5AJ0 | 0.1933 | 0 | A2 | LSU rRNA | C | 4379 | G | 4380 | U | 4381 | U | 4382 | C | 4383 | A | 4384 | U | 4385 | A | 4386 | G | 4387 | cWW | tSH |
| 10 | HL_3J7Y_033 | 3J7Y | 0.2282 | 0 | A | LSU rRNA | A | 2958 | G | 2959 | U | 2960 | C | 2961 | C | 2962 | A | 2963 | U | 2964 | A | 2965 | U | 2966 | cWW | tSH |
| 11 | HL_4V9F_062 | 4V9F | 0.3175 | 0 | 0 | LSU rRNA | A | 2506 | G | 2507 | C | 2508 | A | 2509 | C | 2510 | A | 2511 | U | 2512 | A | 2513 | U | 2514 | cWW | tSH |
| 12 | HL_3J7P_061 | 3J7P | 0.3653 | 0 | 5 | LSU rRNA | C | 4417 | G | 4418 | U | 4419 | U | 4420 | C | 4421 | A | 4422 | U | 4423 | A | 4424 | G | 4425 | ncWW | ntSH |
| 13 | HL_3J79_061 | 3J79 | 0.3815 | 0 | A | LSU rRNA | C | 3199 | G | 3200 | C | 3201 | U | 3202 | C | 3203 | C | 3204 | U | 3205 | A | 3206 | G | 3207 | cWW | tSH |
| 14 | HL_4V91_062 | 4V91 | 0.3874 | 0 | 1 | LSU rRNA | C | 2840 | G | 2841 | U | 2842 | U | 2843 | C | 2844 | A | 2845 | U | 2846 | A | 2847 | G | 2848 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUUCAUAG | 4 |
| AGUUCAUAU | 2 |
| AGUCCAUAU | 2 |
| CGCUCAUAG | 1 |
| AGUCCACAU | 1 |
| AGUUCCUAU | 1 |
| CGUCCACAG | 1 |
| AGCACAUAU | 1 |
| CGCUCCUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUUCAUA | 6 |
| GUCCACA | 2 |
| GUCCAUA | 2 |
| GCUCAUA | 1 |
| GUUCCUA | 1 |
| GCACAUA | 1 |
| GCUCCUA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (14)
- Basepair signature
- cWW-tSH-R-R-R-R-R
- Heat map statistics
- Min 0.12 | Avg 0.30 | Max 0.57
Coloring options: