Motif HL_06048.2 Version HL_06048.2 of this group appears in releases 3.77 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 3-7 | 4-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6DB9_002 | 6DB9 | 0.0000 | 1 | R | RNA (60-MER) | G | 36 | G | 37 | U | 38 | G | 39 | A | 40 | A | 41 | U | 42 | G | 43 | C | 45 | cWW | cSs | |
| 2 | HL_5W1H_001 | 5W1H | 0.8635 | 1 | B | mature crRNA | C | -19 | A | -18 | A | -17 | G | -16 | A | -15 | A | -13 | G | -12 | A | -11 | G | -10 | cWW | csS | cSs |
| 3 | HL_5WLH_001 | 5WLH | 0.8643 | 1 | B | pre-crRNA | C | -19 | A | -18 | A | -17 | G | -16 | A | -15 | A | -13 | G | -12 | A | -11 | G | -10 | cWW | csS | cSs |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAGAAAGAG | 2 |
| GGUGAAUGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAGAAAGA | 2 |
| GUGAAUGA | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-F-F-cSS-cSS-F
- Heat map statistics
- Min 0.04 | Avg 0.39 | Max 0.86
Coloring options: