Motif HL_06285.1 Version HL_06285.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-12 | 4-10 | 4-11 | 5-8 | 5-9 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6XKO_001 | 6XKO | 0.9416 | 4 | A | PreQ1-III riboswitch | C | 4 | A | 5 | A | 6 | C | 7 | U | 8 | U | 9 | A | 10 | U | 15 | U | 16 | U | 17 | A | 18 | G | 19 | G | 20 | cWW | cWW | ||||
| 2 | HL_4WFL_001 | 4WFL | 0.2820 | 0 | A | LSRP RNA | G | 19 | A | 20 | G | 21 | G | 22 | U | 23 | A | 24 | G | 25 | C | 26 | G | 27 | G | 28 | U | 29 | G | 30 | C | 31 | cWW | cWW | tSH | ntSHa | ||
| 3 | HL_4V88_199 | 4V88 | 0.0000 | 0 | A6 | SSU rRNA | A | 520 | A | 521 | U | 522 | G | 523 | U | 524 | A | 525 | A | 526 | A | 527 | U | 528 | A | 529 | C | 530 | C | 531 | U | 532 | cWW | ncWWa | tSH | |||
| 4 | HL_6GSL_221 | 6GSL | 0.4655 | 0 | 3L | tRNA | C | 30 | G | 31 | G | 32 | C | 33 | U | 34 | A | 35 | C | 36 | G | 37 | A | 38 | A | 39 | C | 40 | C | 41 | G | 42 | cWW | ncWW | ncWw | |||
| 5 | HL_5J7L_022 | 5J7L | 0.7502 | 1 | AA | SSU rRNA | U | 1008 | U | 1009 | U | 1010 | C | 1011 | A | 1012 | G | 1013 | G | 1015 | A | 1016 | U | 1017 | G | 1018 | A | 1019 | G | 1020 | A | 1021 | cWW | ncWW | ncWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAACUUAGGAUUUUAGG | 1 |
| GAGGUAGCGGUGC | 1 |
| AAUGUAAAUACCU | 1 |
| CGGCUACGAACCG | 1 |
| UUUCAGAGAUGAGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AACUUAGGAUUUUAG | 1 |
| AGGUAGCGGUG | 1 |
| AUGUAAAUACC | 1 |
| GGCUACGAACC | 1 |
| UUCAGAGAUGAG | 1 |
- Annotations
-
- (5)
- Basepair signature
- cWW-cWW-F-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.28 | Avg 0.58 | Max 0.99
Coloring options: