Motif HL_07320.1 Version HL_07320.1 of this group appears in releases 0.1 to 0.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1S72_016 | 1S72 | 0.8552 | 1 | GNRA (H) | 0 | LSU rRNA | U | 493 | C | 494 | A | 495 | G | 496 | A | 498 | G | 499 | cWW | ntSH |
| 2 | HL_2QBG_022 | 2QBG | 0.9064 | 1 | B | 23S rRNA | U | 641 | U | 642 | A | 643 | A | 644 | U | 646 | G | 647 | cWW | ||
| 3 | HL_3PYO_021 | 3PYO | 0.9286 | 1 | A | 23S ribosomal RNA | C | 641 | G | 642 | A | 643 | A | 644 | A | 646 | G | 647 | cWW | ntSW | |
| 4 | HL_3O30_008 | 3O30 | 0.5938 | 0 | 1 | 18S ribosomal RNA | U | 368 | A | 369 | A | 370 | G | 371 | G | 372 | G | 373 | cWW | ||
| 5 | HL_3O58_002 | 3O58 | 0.3984 | 0 | 1 | 25S ribosomal RNA | C | 69 | A | 70 | A | 71 | C | 72 | C | 73 | G | 74 | cWW | ||
| 6 | HL_3O58_042 | 3O58 | 0.0000 | 1 | 1 | 25S ribosomal RNA | U | 1862 | G | 1863 | A | 1864 | A | 1865 | A | 1867 | G | 1868 | ncWW | ||
| 7 | HL_3PYO_038 | 3PYO | 0.6847 | 0 | A | 23S ribosomal RNA | C | 1533 | G | 1534 | U | 1535 | A | 1536 | C | 1537 | G | 1538 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCAGAAG | 1 |
| UUAACUG | 1 |
| CGAACAG | 1 |
| UAAGGG | 1 |
| CAACCG | 1 |
| UGAACAG | 1 |
| CGUACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAACA | 2 |
| CAGAA | 1 |
| UAACU | 1 |
| AAGG | 1 |
| AACC | 1 |
| GUAC | 1 |
Release history
| Release | 0.1 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_07320.1 | Only in the child motif |
|---|---|---|---|
| HL_07320.2 Compare | HL_2QBG_022, HL_3O58_042, HL_3PYO_038, HL_3O30_008, HL_1S72_016, HL_3PYO_021 | HL_3O58_002 | HL_3O58_011 |
| HL_47025.1 Compare | HL_3O58_002 | HL_2QBG_022, HL_3O58_042, HL_3PYO_038, HL_3O30_008, HL_1S72_016, HL_3PYO_021 | HL_3O30_036, HL_2XZM_024, HL_2XZM_009, HL_3O58_013, HL_3O58_012, HL_3O58_036, HL_3O58_019, HL_3O58_039, HL_2ZJR_034, HL_1S72_036, HL_1FJG_013, HL_3Q1Q_010, HL_3O30_003, HL_3O58_047, HL_2XZM_035, HL_2XZM_034, HL_1U6B_004, HL_3O58_025, HL_2ZJR_004, HL_1S72_022, HL_1S72_045, HL_3AM1_002, HL_2AW7_013, HL_3Q1Q_002 |
- Annotations
-
- (6)
- GNRA (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.40 | Avg 0.66 | Max 0.99
Coloring options: