#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3 4 5 61-62-5
1 HL_3O30_0363O300.878801 SSU rRNAG1778U1779G1780A1781A1782C1783cWW
2 HL_3Q1Q_0023Q1Q0.96361B RNase P class AG77U78A79A80C81C83cWW
3 HL_3O58_0473O580.937511 LSU rRNAA2164G2165A2166A2167A2168U2170cWW
4 HL_3O58_0133O580.763501 LSU rRNAC599G600U601A602A603G604cWW
5 HL_1S72_0451S720.91721GNRA (H)0 LSU rRNAC1793G1794G1795A1796A1797G1799cWW
6 HL_1S72_0361S720.98421GNRA (H)0 LSU rRNAG1468C1469A1470A1471C1472C1474cWWtSHa
7 HL_3O58_0253O580.937611 LSU rRNAG1126G1127U1128A1129A1130C1132cWWntSH
8 HL_3O30_0033O300.911911 SSU rRNAG154U155A156A157U158C160cWW
9 HL_3AM1_0023AM10.73230GNRA variationBASL-truncated tRNAC32U33U34C35G36G37cWW
10 HL_3O58_0363O580.733301 LSU rRNAG1634G1635U1636A1637A1638C1639cWW
11 HL_3O58_0393O580.853801 LSU rRNAA1760C1761C1762U1763U1764U1765cWW
12 HL_1U6B_0041U6B0.79720GNRA variationB197-MERC153A154A155A156C157G158cWW
13 HL_1FJG_0131FJG0.81370A SSU rRNAC522A523G524C525C526G527cWW
14 HL_2ZJR_0042ZJR0.66940X LSU rRNAC133G134U135A136A137G138cWW
15 HL_3Q1Q_0103Q1Q0.00000C tRNAG37C38A39C40C41C42cWWntWH
16 HL_3O58_0023O580.579801 LSU rRNAC69A70A71C72C73G74cWW
17 HL_3O58_0193O580.512601 LSU rRNAG844G845A846A847A848C849cWW
18 HL_3O58_0123O580.569901 LSU rRNAC543C544U545C546G547G548cWW
19 HL_1S72_0221S720.55930GNRA (H)0 LSU rRNAU733U734C735A736A737G738cWW
20 HL_2XZM_0342XZM0.58190A SSU rRNAA1660G1661C1662A1663A1664U1665cWW
21 HL_2XZM_0242XZM0.61560A SSU rRNAC1094G1095C1096A1097A1098G1099cWWntsS
22 HL_2XZM_0092XZM0.70580A SSU rRNAU359U360A361G362G363G364ncWW
23 HL_2XZM_0352XZM0.87400A SSU rRNAG1731U1732G1733A1734A1735C1736cWW
24 HL_2AW7_0132AW70.83050A SSU rRNAC522A523G524C525C526G527cWW
25 HL_2ZJR_0342ZJR0.88240GNRA variation (H)X LSU rRNAC1376G1377A1378A1379C1380G1381cWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUGAAC2
CGUAAG2
CAGCCG2
GUAACGC1
AGAAAGU1
CGGAACG1
GCAACUC1
GGUAAGC1
GUAAUUC1
CUUCGG1
GGUAAC1
ACCUUU1
CAAACG1
GCACCC1
CAACCG1
GGAAAC1
CCUCGG1
UUCAAG1
AGCAAU1
CGCAAG1
UUAGGG1
CGAACG1
Non-Watson-Crick part of the motif
SequenceCounts
GUAA3
UGAA2
AGCC2
GCAA2
UAACG1
GAAAG1
GGAAC1
CAACU1
GUAAG1
UAAUU1
UUCG1
CCUU1
AAAC1
CACC1
AACC1
GAAA1
CUCG1
UCAA1
UAGG1
GAAC1

Release history

Release0.2
Date2011-12-08
Status> 2 parents

Parent motifs

Parent motifCommon motif instancesOnly in HL_47025.1Only in the parent motif
HL_61951.1
Compare
HL_3O30_036, HL_2XZM_024, HL_2XZM_009, HL_3O58_013, HL_3O58_012, HL_3O58_036, HL_3O58_019, HL_3O58_039, HL_2ZJR_034, HL_1S72_036, HL_1FJG_013, HL_3Q1Q_010, HL_3AM1_002, HL_1U6B_004, HL_2XZM_035, HL_2XZM_034, HL_3O58_047, HL_2ZJR_004, HL_1S72_022, HL_3O30_003, HL_2AW7_013, HL_3Q1Q_002HL_3O58_002, HL_1S72_045, HL_3O58_025HL_3O58_011
HL_42509.1
Compare
HL_1S72_045, HL_3O58_025HL_3O30_036, HL_2XZM_024, HL_2XZM_009, HL_3O58_013, HL_3O58_012, HL_3O58_036, HL_3O58_019, HL_3O58_039, HL_2ZJR_034, HL_1S72_036, HL_1FJG_013, HL_3Q1Q_010, HL_3O30_003, HL_3O58_047, HL_2XZM_035, HL_2XZM_034, HL_1U6B_004, HL_3O58_002, HL_2ZJR_004, HL_1S72_022, HL_3AM1_002, HL_2AW7_013, HL_3Q1Q_002HL_3P22_003, HL_3P22_007, HL_1M5O_002, HL_3PYO_063, HL_3MUR_001, HL_1S72_054, HL_2GIS_003, HL_2AW7_020, HL_1Y0Q_003, HL_3DVZ_001, HL_3AM1_003, HL_3IAB_001, HL_2AW7_007, HL_1GID_004, HL_1U9S_004, HL_1GID_001, HL_1KH6_002, HL_2ZJR_005, HL_1HMH_003, HL_1HMH_002, HL_2ZJR_026, HL_1S72_020, HL_3KTW_001, HL_1S72_048, HL_1S72_028, HL_1RLG_002, HL_1FJG_020, HL_1FJG_027, HL_1S72_072, HL_2AW7_010, HL_3NPB_002
HL_07320.1
Compare
HL_3O58_002HL_3O30_036, HL_2XZM_024, HL_2XZM_009, HL_3O58_013, HL_3O58_012, HL_3O58_036, HL_3O58_019, HL_3O58_039, HL_2ZJR_034, HL_1S72_036, HL_1FJG_013, HL_3Q1Q_010, HL_3O30_003, HL_3O58_047, HL_2XZM_035, HL_2XZM_034, HL_1U6B_004, HL_3O58_025, HL_2ZJR_004, HL_1S72_022, HL_1S72_045, HL_3AM1_002, HL_2AW7_013, HL_3Q1Q_002HL_2QBG_022, HL_3O58_042, HL_3PYO_038, HL_3O30_008, HL_1S72_016, HL_3PYO_021

Children motifs

Child motifCommon motif instancesOnly in HL_47025.1Only in the child motif
HL_67042.1
Compare
HL_2ZJR_034, HL_1S72_036, HL_2XZM_024, HL_2XZM_035, HL_2XZM_009, HL_1S72_045, HL_1FJG_013, HL_1U6B_004, HL_2AW7_013, HL_3Q1Q_010, HL_3AM1_002, HL_2XZM_034HL_3O30_036, HL_1S72_022, HL_3O58_047, HL_3O58_025, HL_3O58_013, HL_3O58_012, HL_3O58_002, HL_3O58_036, HL_2ZJR_004, HL_3Q1Q_002, HL_3O58_019, HL_3O58_039, HL_3O30_003HL_2OIU_002, HL_4A1B_017, HL_2OIU_001, HL_2OIU_006, HL_4A1B_013, HL_2OIU_004, HL_4A1B_011, HL_2XZM_005, HL_1M5O_004, HL_2Y9B_002, HL_4A1B_018, HL_4A1B_059, HL_4A1C_006, HL_2ZJR_019, HL_3V2F_015, HL_2ZJR_014, HL_2ZJR_015, HL_4ENB_002, HL_2XXA_002, HL_4A1B_010, HL_3IWN_001, HL_1S72_054, HL_2QBG_016, HL_3V2F_016, HL_4AOB_003, HL_3E5C_001, HL_2XZM_031, HL_2ZJR_069, HL_3U5H_047, HL_2OIU_003, HL_2Y9B_001, HL_4A1B_065, HL_1KXK_001, HL_1HMH_001, HL_3U5H_048, HL_1HMH_002, HL_2QBG_021, HL_1S72_040, HL_2EZ6_001, HL_3KTW_002, HL_3AM1_003, HL_2ZJR_061, HL_2ZJR_067, HL_1FJG_022, HL_2AW7_019, HL_1FJG_020, HL_1FJG_027, HL_1FJG_024, HL_1FJG_028, HL_1S72_048, HL_1Q96_001, HL_2XZM_027, HL_1MFQ_002, HL_3NKB_002, HL_2XZM_023, HL_2XZM_020, HL_3U5H_013, HL_3SUX_002, HL_1U9S_002, HL_3U5H_033, HL_3U5H_030, HL_1S72_033, HL_2QBG_033, HL_3U5H_039, HL_1S72_070, HL_3U5F_029, HL_3NVI_001, HL_1FJG_032, HL_2QBG_066, HL_3MOJ_001, HL_2EZ6_002, HL_2AW7_003, HL_2AW7_004, HL_2XZM_015, HL_2AW7_007, HL_3UCZ_001, HL_3GX5_002, HL_3GX5_003, HL_3V2F_062, HL_1FJG_019, HL_3G78_006, HL_3V2F_067, HL_3V2F_069, HL_3U5H_010, HL_2BTE_003, HL_1S72_020, HL_3U5H_025, HL_2ZZM_003, HL_2ZJR_047, HL_1S72_028, HL_1Q96_003, HL_1FJG_007, HL_2QBZ_001, HL_1FJG_003, HL_2QBG_049, HL_2BTE_007, HL_3NPN_001, HL_2AW7_032, HL_488D_001, HL_488D_002, HL_1MFQ_001, HL_4A1B_052, HL_4AOB_002, HL_3SD3_002, HL_2AW7_016, HL_2IL9_003, HL_3V2F_056, HL_3ADC_003, HL_1JID_001, HL_1KH6_002, HL_1S72_015, HL_1S72_017, HL_3RG5_003, HL_3U5H_017, HL_3U5H_016, HL_2ZJR_056, HL_2HO7_004, HL_3U5F_015, HL_2ZJR_005, HL_1FJG_010, HL_1UN6_004, HL_3RW6_001, HL_1LNG_002, HL_2AW7_022, HL_1Y0Q_007, HL_1Y0Q_004, HL_1Y0Q_003, HL_2AW7_024, HL_1Y0Q_001, HL_2QBG_059, HL_2AW7_028, HL_3U5F_025, HL_1GID_004, HL_3T4B_001, HL_3U5H_011, HL_4A1B_029, HL_3U5H_019, HL_4A1B_026, HL_3V2F_044, HL_4A1B_020, HL_1S72_009, HL_2PXV_001, HL_3DVZ_001, HL_4A1B_046, HL_2ZJR_026, HL_3U5F_003, HL_3NPB_002, HL_1S72_023, HL_2QBG_065, HL_3Q1Q_008, HL_2QBG_060, HL_3Q1Q_003, HL_3Q1Q_001, HL_1X8W_001, HL_3Q1Q_006, HL_1X8W_003, HL_3Q1Q_004, HL_3P22_005, HL_3P22_007, HL_4A1B_035, HL_2NZ4_016, HL_3V2F_032, HL_2NZ4_012, HL_1RLG_002, HL_3V7E_006, HL_2QBG_028, HL_2ZJR_062, HL_3E5C_002, HL_1MZP_001, HL_2QBG_071, HL_1X8W_005, HL_3U5F_037, HL_3U5H_074, HL_2ZJR_031, HL_3U5F_033, HL_1S72_072, HL_1GID_001, HL_2AW7_020, HL_1NBS_007, HL_3CUN_001, HL_2OIU_005, HL_3U5F_026, HL_3IAB_001, HL_2QBG_036, HL_1U9S_004, HL_3V2F_029, HL_1G1X_003, HL_3D0U_004, HL_3G78_003, HL_3V2F_027, HL_3V2F_020, HL_1G1X_001, HL_1FJG_016, HL_1U6B_001, HL_3U5F_022, HL_3U5H_065, HL_3U5H_066, HL_3V2F_045, HL_3U5H_060, HL_3U5H_036, HL_2QBG_048, HL_1S72_060, HL_3V2F_061, HL_1S72_065, HL_1S72_066, HL_2AW7_010, HL_4A1B_064
HL_49036.1
Compare
HL_2ZJR_004, HL_1S72_022HL_3O30_036, HL_2XZM_024, HL_2XZM_009, HL_3O58_013, HL_3O58_012, HL_3O58_036, HL_3O58_019, HL_3O58_039, HL_2ZJR_034, HL_1S72_036, HL_1FJG_013, HL_3Q1Q_010, HL_3AM1_002, HL_3O58_047, HL_2XZM_035, HL_2XZM_034, HL_1U6B_004, HL_3O58_025, HL_3O58_002, HL_1S72_045, HL_3O30_003, HL_2AW7_013, HL_3Q1Q_002HL_2ZJR_046, HL_4AL5_001, HL_3D0U_003, HL_2QBG_043, HL_1XJR_001, HL_4A1B_041, HL_3U5H_042, HL_1S72_016
HL_98523.1
Compare
HL_3Q1Q_002HL_3O30_036, HL_2XZM_024, HL_2XZM_009, HL_3O58_013, HL_3O58_012, HL_3O58_036, HL_3O58_019, HL_3O58_039, HL_2ZJR_034, HL_1S72_036, HL_1FJG_013, HL_3Q1Q_010, HL_3O30_003, HL_3O58_047, HL_2XZM_035, HL_2XZM_034, HL_1U6B_004, HL_3O58_025, HL_3O58_002, HL_2ZJR_004, HL_1S72_022, HL_1S72_045, HL_3AM1_002, HL_2AW7_013HL_3P49_002, HL_1U9S_001, HL_2XZM_003
Annotations
  • (19)
  • GNRA (H) (3)
  • GNRA variation (2)
  • GNRA variation (H) (1)
  • Basepair signature
    Heat map statistics
    Min 0.09 | Avg 0.65 | Max 0.99
    Help

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