Motif HL_07579.2 Version HL_07579.2 of this group appears in releases 3.77 to 3.79

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9		10		11		12		13		14	1-14	2-13	3-12	4-11
1	HL_4JF2_002	4JF2	0.7604	2	A	PreQ1-II Riboswitch	U	28	A	29	C	30	U	31	U	34	U	35	U	36	C	37	C	38	U	39	U	40	U	41	G	42	A	43	cWW	cWW
2	HL_5D5L_002	5D5L	0.6794	2	A	PreQ1-II riboswitch	U	28	A	29	C	30	U	31	U	32	U	35	U	36	C	37	C	38	U	39	U	40	U	41	G	42	A	43	cWW	cWW
3	HL_7JRS_001	7JRS	0.0000	1	A	RNA 3D nanocage	C	61	U	62	G	63	A	64	A	65	C	67	A	68	G	69	G	70	C	71	A	72	C	73	G	74	G	75	cWW	ncWWa	ncWW	tWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UACUUAUUUCCUUUGA	2
CUGAAGCAGGCACGG	1

Non-Watson-Crick part of the motif

Sequence	Counts
ACUUAUUUCCUUUG	2
UGAAGCAGGCACG	1

Release history

Release	3.77	3.78	3.79
Date	2023-12-06	2024-01-03	2024-01-03
Status	Updated, 1 parent	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (3)
Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F-F-F
Heat map statistics: Min 0.42 | Avg 0.41 | Max 0.76

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