Motif HL_07579.2 Version HL_07579.2 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-12 | 4-11 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4JF2_002 | 4JF2 | 0.7604 | 2 | A | PreQ1-II Riboswitch | U | 28 | A | 29 | C | 30 | U | 31 | U | 34 | U | 35 | U | 36 | C | 37 | C | 38 | U | 39 | U | 40 | U | 41 | G | 42 | A | 43 | cWW | cWW | |||
| 2 | HL_5D5L_002 | 5D5L | 0.6794 | 2 | A | PreQ1-II riboswitch | U | 28 | A | 29 | C | 30 | U | 31 | U | 32 | U | 35 | U | 36 | C | 37 | C | 38 | U | 39 | U | 40 | U | 41 | G | 42 | A | 43 | cWW | cWW | |||
| 3 | HL_7JRS_001 | 7JRS | 0.0000 | 1 | A | RNA 3D nanocage | C | 61 | U | 62 | G | 63 | A | 64 | A | 65 | C | 67 | A | 68 | G | 69 | G | 70 | C | 71 | A | 72 | C | 73 | G | 74 | G | 75 | cWW | ncWWa | ncWW | tWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UACUUAUUUCCUUUGA | 2 |
| CUGAAGCAGGCACGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACUUAUUUCCUUUG | 2 |
| UGAAGCAGGCACG | 1 |
- Annotations
- Basepair signature
- cWW-cWW-F-F-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.42 | Avg 0.41 | Max 0.76
Coloring options: