#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 61-62-5
1 HL_5J7L_2135J7L0.70754DA LSU rRNAC1170G1171C1172G1177C1178G1179cWWncWW
2 HL_4JF2_0024JF20.419010APreQ1-II RiboswitchU28A29C30U41G42A43cWWcWW
3 HL_5D5L_0025D5L0.000010APreQ1-II riboswitchU28A29C30U41G42A43cWWcWW
4 HL_8C3A_2108C3A0.641711Pseudoknot geometry (H)CM SSU rRNAU813A814U815C827U828A829cWW

3D structures

Complete motif including flanking bases
SequenceCounts
UACUUAUUUCCUUUGA2
CGCUUAUGCG1
UAUUUUGUUGGUUUCUA1
Non-Watson-Crick part of the motif
SequenceCounts
ACUUAUUUCCUUUG2
GCUUAUGC1
AUUUUGUUGGUUUCU1

Release history

Release3.88
Date2024-09-11
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (3)
  • Pseudoknot geometry (H) (1)
  • Basepair signature
    cWW-cWW-F-F
    Heat map statistics
    Min 0.42 | Avg 0.48 | Max 0.72
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