Motif HL_07886.1 Version HL_07886.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8P9A_180 | 8P9A | 0.7442 | 3 | AR | LSU rRNA | C | 3240 | G | 3241 | G | 3242 | A | 3245 | G | 3247 | cWW |
| 2 | HL_2QUX_002 | 2QUX | 0.7076 | 3 | F | RNA (25-MER) | G | 10 | A | 11 | A | 13 | G | 15 | C | 17 | cWW |
| 3 | HL_8JY0_002 | 8JY0 | 0.0000 | 2 | B | RhoBAST | U | 30 | G | 31 | A | 32 | G | 34 | A | 36 | cWW |
| 4 | HL_9BUN_002 | 9BUN | 0.0794 | 2 | A | RNA (48-MER) | U | 14 | G | 15 | A | 16 | G | 18 | A | 20 | cWW |
| 5 | HL_9DXL_002 | 9DXL | 0.1393 | 2 | A | RhoBAST aptamer | U | 14 | G | 15 | A | 16 | G | 18 | A | 20 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAGGA | 3 |
| CGGAAAGG | 1 |
| GAUAUGGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAGG | 3 |
| GGAAAG | 1 |
| AUAUGG | 1 |
- Annotations
-
- (5)
- Basepair signature
- cWW-F-F-F
- Heat map statistics
- Min 0.08 | Avg 0.44 | Max 0.78
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