Hairpin Loop Motif Atlas Release 3.91

#	Motif	Core Nts	Instances
1	HL_37824.3 View exemplar Basepair signature: cWW-F-F-F-F History status: Updated, 1 parent GNRA (282) GNRA variation (11) GNRA with GA tSW pair (4) GNRA related (2)	6	299
2	HL_28252.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F-F History status: New id, > 2 parents T-loop with 2 stacked bulged bases (136) T-loop with 2 bulged bases not stacked (1) T-loop related (1) GNRA with extra near cWW (1)	9	139
3	HL_34617.2 View exemplar Basepair signature: cWW-tSW-F History status: Updated, 1 parent UNCG (50) UNCG variation (2)	5	52
4	HL_06059.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Updated, 1 parent tRNA anticodon loop (42) Anticodon loop related (5)	9	47
5	HL_46878.1 View exemplar Basepair signature: cWW-F History status: New id, 2 parents Mini UNCG (28) Mini UNCG with extended bulge (2)	3	30
6	HL_93324.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Updated, 1 parent Pseudoknot geometry (23)	8	23
7	HL_48417.2 View exemplar Basepair signature: cWW-F-F History status: Updated, 1 parent tRNA anticodon loop with synthetase (1) tRNA D-loop (1)	4	22
8	HL_77436.3 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Updated, 2 parents T-loop related (13) tRNA anticodon loop with synthetase (3) Other HL (2) T-loop with 1 bulged base (2) tRNA anticodon loop (1) T-loop (1)	7	22
9	HL_22584.4 View exemplar Basepair signature: cWW-tSW-F History status: Updated, 1 parent Fab BL3-6 binding hairpin with tSW (18) Other HL (3)	5	21
10	HL_33074.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Updated, 1 parent U1 small nuclear ribonucleoprotein A binding hairpin (19)	10	19
11	HL_31585.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 2 parents Purine riboswitch (7) GNRA variation (6) Pseudoknot geometry (2) tRNA anticodon loop (1)	5	18
12	HL_01609.1 View exemplar Basepair signature: cWW-tWH-F-F-F History status: New id, 2 parents T-loop with 2 bulged bases not stacked (8) T-loop with 2 stacked bulged bases (6) T-loop with 1 bulged base (3)	7	18
13	HL_20811.2 View exemplar Basepair signature: cWW-cWS-F History status: Exact match tRNA D-loop (16) Other HL (1)	5	17
14	HL_56334.1 View exemplar Basepair signature: cWW-F History status: Exact match Mini UNCG (14) Mini UNCG related (2)	3	16
15	HL_75660.1 View exemplar Basepair signature: cWW-F History status: New id, 1 parent	3	16
16	HL_81538.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F History status: New id, 1 parent GNRA wlth tandem sheared (12) GNRA wlth extra near cWW (2) Anticodon loop related (1)	8	15
17	HL_30680.2 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Updated, 1 parent Pseudoknot geometry (13)	7	14
18	HL_53890.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 2 parents UNCG variation (6)	5	13
19	HL_30068.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 1 parent GNRA (1)	6	13
20	HL_75293.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Updated, 1 parent	10	13
21	HL_57176.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent Pseudoknot geometry with 3' bulge (13)	5	13
22	HL_66853.6 View exemplar Basepair signature: cWW-F-F-F-cSH History status: Updated, 2 parents tRNA D-loop (3)	7	12
23	HL_27670.1 View exemplar Basepair signature: cWW-tWH-F-F History status: New id, 1 parent T-loop with unstacked turn (12)	6	12
24	HL_73266.7 View exemplar Basepair signature: cWW-cWW-cSW-cSH-F-F-F History status: Exact match	9	11
25	HL_84299.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, > 2 parents GNRA related (4) T-loop related (4)	8	10
26	HL_85367.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 1 parent	8	10
27	HL_47787.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 2 parents	6	10
28	HL_49922.2 View exemplar Basepair signature: cWW-F-F-F History status: Updated, 1 parent	5	10
29	HL_77600.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: New id, 2 parents Pseudoknot geometry (3)	9	10
30	HL_04783.2 View exemplar Basepair signature: cWW-F-F-F History status: Exact match GNRA related (3)	5	9
31	HL_65794.2 View exemplar Basepair signature: cWW-F-F-F-F History status: Updated, 1 parent Pseudoknot geometry (4) Ribsomal LSU H95 (4)	6	9
32	HL_80709.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent	5	9
33	HL_02837.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 2 parents GNRA variation (6)	6	9
34	HL_20167.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 2 parents T-loop related (1) GNRA with extra cWW (1)	8	9
35	HL_67407.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Updated, 2 parents	10	9
36	HL_64690.5 View exemplar Basepair signature: cWW-cSW-F-F-F-F History status: Updated, 1 parent	8	8
37	HL_36684.3 View exemplar Basepair signature: cWW-F-F-F-F-cWW-F-F-F History status: Exact match	11	8
38	HL_32346.1 View exemplar Basepair signature: cWW-F History status: New id, 2 parents	3	8
39	HL_37369.1 View exemplar Basepair signature: cWW-tSH-F-F-F History status: New id, 1 parent	7	8
40	HL_52953.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	8
41	HL_04171.6 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F History status: Exact match	10	8
42	HL_93616.2 View exemplar Basepair signature: cWW-cWS-F-F-F-F History status: Updated, 1 parent tRNA D-loop (8)	8	8
43	HL_23696.2 View exemplar Basepair signature: cWW-F-F History status: Updated, 2 parents UNCG variation (1)	4	8
44	HL_78347.3 View exemplar Basepair signature: cWW-F-F-tSW History status: Updated, 1 parent	6	8
45	HL_87954.2 View exemplar Basepair signature: cWW-tSW-F History status: Updated, 1 parent	5	7
46	HL_91939.1 View exemplar Basepair signature: cWW-tSH-tHH-tWW-F-F-F History status: New id, 1 parent	11	7
47	HL_40252.2 View exemplar Basepair signature: cWW-cWS-tHS-F History status: Exact match	7	7
48	HL_20743.5 View exemplar Basepair signature: cWW-cWW-F-F-F-F History status: Exact match	8	7
49	HL_10453.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 2 parents tRNA anticodon loop (3) GNRA related (2) Anticodon loop related (1)	7	7
50	HL_89567.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 1 parent	6	7
51	HL_45127.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 2 parents UNCG variation (1)	5	6
52	HL_38901.1 View exemplar Basepair signature: cWW-F-cSH History status: New id, 2 parents tRNA D-loop (4)	5	6
53	HL_83632.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match tRNA anticodon loop (6)	8	6
54	HL_97756.2 View exemplar Basepair signature: cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F History status: Updated, 1 parent	14	6
55	HL_35677.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Updated, 1 parent Pseudoknot with intercalation (3)	9	6
56	HL_55195.3 View exemplar Basepair signature: cWW-F History status: Updated, 1 parent	3	6
57	HL_74055.1 View exemplar Basepair signature: cWW-tWH-cWH-tSH-tHW-tHW-tSW History status: New id, 1 parent	13	6
58	HL_39454.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 1 parent	7	6
59	HL_19210.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Updated, 2 parents	10	6
60	HL_88205.1 View exemplar Basepair signature: cWW-cWS-tSW-F-F History status: New id, 1 parent	7	6
61	HL_56131.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	6
62	HL_09967.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Updated, 2 parents tRNA anticodon loop (2) Anticodon loop related (2) Pseudoknot geometry (1) Pseudoknot (1)	8	6
63	HL_32735.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F History status: New id, 1 parent	9	6
64	HL_61996.1 View exemplar Basepair signature: cWW-tWH-F-F-F History status: New id, 1 parent	7	6
65	HL_99769.2 View exemplar Basepair signature: cWW-cWW-F-F-F-F History status: Updated, 2 parents	8	6
66	HL_81545.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F History status: New id, 1 parent	8	6
67	HL_04259.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 1 parent GNRA with extra cWW (3) GNRA related (1) tRNA anticodon loop (1) GNRA with extra near cWW (1)	8	6
68	HL_42998.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 1 parent	8	6
69	HL_01962.1 View exemplar Basepair signature: cWW-tWH-tWH-F History status: New id, 1 parent	7	5
70	HL_23827.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	5
71	HL_45175.1 View exemplar Basepair signature: cWW-cWS-F-F History status: Exact match tRNA D-loop (5)	6	5
72	HL_50779.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Updated, 1 parent	9	5
73	HL_05304.2 View exemplar Basepair signature: cWW-cWW-F-F-tSH-F-F-F-F-F History status: Updated, 1 parent	13	5
74	HL_41019.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Updated, 2 parents Anticodon loop related (1)	10	5
75	HL_50860.1 View exemplar Basepair signature: cWW-F-cWH-F-F-F-F History status: New id, 1 parent	9	5
76	HL_13963.2 View exemplar Basepair signature: cWW-F-F History status: Updated, 1 parent	4	5
77	HL_06226.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Updated, 1 parent	10	5
78	HL_20554.2 View exemplar Basepair signature: cWW-tWH-F-F-F History status: Exact match GNRA-like with tWH (2)	7	5
79	HL_42046.2 View exemplar Basepair signature: cWW-tSS-F-F-F History status: Updated, 1 parent	7	5
80	HL_93438.1 View exemplar Basepair signature: cWW-F-F-F-F-F-cSH-F History status: New id, 1 parent Pseudoknot with intercalation (3)	10	5
81	HL_07886.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent	5	5
82	HL_89881.3 View exemplar Basepair signature: cWW-tHW-F-F-F-F-F-F History status: Updated, 1 parent	10	5
83	HL_38649.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F-F History status: Exact match	10	5
84	HL_53454.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F History status: New id, 2 parents	9	5
85	HL_86769.4 View exemplar Basepair signature: cWW-cWW-cSH-F History status: Exact match	7	5
86	HL_38808.1 View exemplar Basepair signature: cWW-cWW History status: Exact match	4	4
87	HL_86877.1 View exemplar Basepair signature: cWW-cSH-F-F-F-F-F-F History status: Exact match	9	4
88	HL_50537.6 View exemplar Basepair signature: cWW-F-F-F History status: Exact match tRNA anticodon loop with synthetase (3) Other HL (1)	5	4
89	HL_09260.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match tRNA D-loop (3)	6	4
90	HL_55436.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match Pseudoknot geometry (1)	10	4
91	HL_98864.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F-F-F History status: Exact match T-loop with unstacked turn (4)	10	4
92	HL_89199.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match Mini UNCG (4)	5	4
93	HL_10446.1 View exemplar Basepair signature: cWW-F-F History status: New id, 2 parents	4	4
94	HL_82710.2 View exemplar Basepair signature: cWW-F-F-F History status: Updated, 1 parent	5	4
95	HL_07951.1 View exemplar Basepair signature: cWW-F-F History status: Exact match tRNA D-loop (3)	4	4
96	HL_49941.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match tRNA D-loop (4)	7	4
97	HL_68572.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Exact match	9	3
98	HL_04642.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match tRNA D-loop (3)	7	3
99	HL_68767.1 View exemplar Basepair signature: cWW-cWS-tSH-cWS-F History status: Exact match tRNA D-loop (3)	8	3
100	HL_91503.7 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Updated, 1 parent	9	3
101	HL_12758.2 View exemplar Basepair signature: cWW-tSH-F-cHW-cWH-F-F-tSH-cWH-cHW-cWH-cHW-cWH-cWH-cHW-tSH-cHW-cWH-F-cWH History status: Exact match G-quadruplex (3)	22	3
102	HL_97917.2 View exemplar Basepair signature: cWW-F-F-F-F History status: Updated, 1 parent	6	3
103	HL_70782.1 View exemplar Basepair signature: cWW History status: New id, 2 parents	2	3
104	HL_31581.6 View exemplar Basepair signature: cWW-cHS-F-F-F-cWW-F-F-F History status: Exact match	11	3
105	HL_74379.2 View exemplar Basepair signature: cWW-F-F-cSS-cSS-F History status: Exact match	9	3
106	HL_88364.2 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F-F-F-F History status: Updated, 1 parent	15	3
107	HL_09452.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match tRNA D-loop (1)	5	3
108	HL_80922.2 View exemplar Basepair signature: cWW-tSH-F History status: Updated, 1 parent	5	3
109	HL_02887.2 View exemplar Basepair signature: cWW-tWH-F-F-F-F-F-F History status: Updated, 1 parent T-loop with 3 stacked bulged bases (3)	10	3
110	HL_81100.2 View exemplar Basepair signature: cWW History status: Updated, 1 parent	2	3
111	HL_03273.2 View exemplar Basepair signature: cWW-F-F-tWH-F-F-F History status: Updated, 1 parent	9	3
112	HL_41464.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 1 parent	8	3
113	HL_81205.2 View exemplar Basepair signature: cWW-cWW-tWH-F-tWH-F-F-F-F-F History status: Exact match	14	3
114	HL_07480.1 View exemplar Basepair signature: cWW-tSH-F-F-F History status: Exact match	7	3
115	HL_67667.2 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	3
116	HL_20751.2 View exemplar Basepair signature: cWW-tHW-F-F-F-F-F-F-F-F-F History status: Exact match	13	3
117	HL_49687.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent	5	3
118	HL_86109.1 View exemplar Basepair signature: cWW-F-tWH-F-F-F-F-F-F-F History status: Exact match	12	3
119	HL_94376.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Exact match Pseudoknot geometry (2)	11	3
120	HL_73247.1 View exemplar Basepair signature: cWW-F-tWH-F-F-F-F-F-F-F-F-F-F History status: Exact match Pseudoknot geometry (3)	15	3
121	HL_10744.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 1 parent	7	2
122	HL_53504.3 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F-F History status: Exact match	10	2
123	HL_73255.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	2
124	HL_08510.1 View exemplar Basepair signature: cWW-F-F-cSH-F-F History status: Exact match	8	2
125	HL_21248.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: New id, 1 parent	11	2
126	HL_64292.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 1 parent	14	2
127	HL_12289.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 2 parents UNCG variation (1)	6	2
128	HL_04725.1 View exemplar Basepair signature: cWW-cWS-cWW-cWW-cWS History status: Exact match	8	2
129	HL_08554.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	17	2
130	HL_21372.1 View exemplar Basepair signature: cWW-F-cSH-F-F History status: Exact match	7	2
131	HL_02581.1 View exemplar Basepair signature: cWW-tSH-cWS-tSW-F-F-F History status: Exact match tRNA D-loop (2)	11	2
132	HL_25847.1 View exemplar Basepair signature: cWW-F-cSH-tHW-F-F-F History status: New id, 1 parent	10	2
133	HL_39243.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	2
134	HL_70658.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: New id, 1 parent	12	2
135	HL_83808.3 View exemplar Basepair signature: cWW-tWW-F-F-F History status: Updated, 1 parent Pseudoknot (2)	7	2
136	HL_04750.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 1 parent	8	2
137	HL_18565.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F History status: New id, 2 parents	8	2
138	HL_45785.1 View exemplar Basepair signature: cWW-F-F-F-F-cSH-F-F History status: Exact match	11	2
139	HL_50688.1 View exemplar Basepair signature: cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F History status: New id, 1 parent	14	2
140	HL_65472.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 2 parents	7	2
141	HL_80599.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: New id, 1 parent	9	2
142	HL_25967.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, no parents	7	2
143	HL_55305.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	2
144	HL_59735.3 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	2
145	HL_36335.1 View exemplar Basepair signature: cWW-F-F-cSS-cSS-F History status: Exact match	9	2
146	HL_13189.1 View exemplar Basepair signature: cWW-F-F History status: New id, 1 parent	4	2
147	HL_26631.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	2
148	HL_47732.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	2
149	HL_60293.1 View exemplar Basepair signature: cWW-cWH-F-cWH-cHW-cHW-cWH-cHW-cWH-F-cWH-cWH-cWH-F History status: Exact match G-quadruplex (2)	18	2
150	HL_70802.1 View exemplar Basepair signature: cWW-cWS-F History status: Exact match UNCG related (1)	5	2
151	HL_98870.1 View exemplar Basepair signature: cWW-tSH-tWW-F-F-F-F-F History status: Exact match	11	2
152	HL_20535.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 1 parent	6	2
153	HL_22622.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 1 parent Mini UNCG with extended bulge (1)	7	2
154	HL_37344.1 View exemplar Basepair signature: cWW-F-F History status: New id, 1 parent	6	2
155	HL_71391.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 1 parent	6	2
156	HL_60938.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F History status: New id, 2 parents	12	2
157	HL_03333.1 View exemplar Basepair signature: cWW-F-F-F-cSH-F History status: Exact match	8	2
158	HL_76390.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match Mini UNCG related (1)	4	2
159	HL_89346.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: New id, 1 parent	17	2
160	HL_86012.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F History status: Exact match T-loop with unstacked turn (2)	8	2
161	HL_10456.1 View exemplar Basepair signature: cWW-F-cWW-tWW-F-tHW-F-F-F-F-F-F-F History status: Exact match	17	2
162	HL_23689.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	2
163	HL_53099.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	2
164	HL_68257.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	11	2
165	HL_15574.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	2
166	HL_73183.1 View exemplar Basepair signature: cWW-tSH-tHW-F-F-F-F-F-F-F-F-F History status: Exact match Pseudoknot geometry with G-bulge (2)	15	2
167	HL_62934.1 View exemplar Basepair signature: cWW-tSH-F History status: Exact match	6	2
168	HL_10540.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	2
169	HL_16398.1 View exemplar Basepair signature: cWW-F-F-F-F-tSW-F History status: Exact match	11	2
170	HL_29129.2 View exemplar Basepair signature: cWW-tWH-F-F-F-F-F History status: Updated, 1 parent	9	2
171	HL_43517.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match Mini UNCG (1)	5	2
172	HL_57863.1 View exemplar Basepair signature: cWW-F-F-cWH-cWH-F History status: Exact match G-quadruplex fragment (2)	9	2
173	HL_90620.1 View exemplar Basepair signature: cWW-F-F-F-F-cSW-cSH-F History status: Exact match	11	2
174	HL_82820.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, no parents	5	1
175	HL_97733.1 View exemplar Basepair signature: cWW-F-F-F-cSH-F History status: Exact match	8	1
176	HL_16991.1 View exemplar Basepair signature: cWW-cWH-cWH-F-cWH-F History status: Exact match G-quadruplex fragment (1)	8	1
177	HL_29762.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, no parents	7	1
178	HL_58224.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
179	HL_35354.1 View exemplar Basepair signature: cWW-cWH-cHW-F-cWH-cHW-F-F-tHH-cWH-tWW-cWH-F-tWW-cWH-F-cWH History status: Exact match	21	1
180	HL_50318.1 View exemplar Basepair signature: cWW-cSH-F-F History status: Exact match	6	1
181	HL_80362.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	1
182	HL_91270.1 View exemplar Basepair signature: cWW-F-cWH-F History status: New id, 1 parent	6	1
183	HL_02483.1 View exemplar Basepair signature: cWW-tWH-F-cSH-F-F-F History status: Exact match	10	1
184	HL_24792.1 View exemplar Basepair signature: cWW-cWS-F-F-F History status: Exact match	6	1
185	HL_18423.1 View exemplar Basepair signature: cWW-tSH-tHS-F History status: Exact match	7	1
186	HL_58539.1 View exemplar Basepair signature: cWW-tWS-F-tHW-F-F-F-F-F-F-F-F History status: Exact match	13	1
187	HL_87463.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F History status: Exact match	9	1
188	HL_80411.1 View exemplar Basepair signature: cWW-F-cSH-F-F-F-F History status: Exact match tRNA D-loop (1)	9	1
189	HL_59564.1 View exemplar Basepair signature: cWW-F-cSS-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	20	1
190	HL_08602.1 View exemplar Basepair signature: cWW-cSS-F-cSS-F-F-F-F-F History status: Exact match	11	1
191	HL_21400.1 View exemplar Basepair signature: cWW-tWH-tSW-cWW-cWH-cHW-cWH-cWH-cHW-cWH-cHW-cWH-cWH-cWH-cWH-cWH History status: Exact match G-quadruplex (1)	18	1
192	HL_35941.1 View exemplar Basepair signature: cWW-F History status: Exact match	3	1
193	HL_91641.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-cSW-F-F-F-F History status: Exact match	16	1
194	HL_02811.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	1
195	HL_12870.1 View exemplar Basepair signature: cWW-tHW-F-F-F-F-F-F-F-F-F History status: Exact match	12	1
196	HL_70751.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Exact match	11	1
197	HL_98252.1 View exemplar Basepair signature: cWW-tWW-F-F-F-F History status: Exact match	8	1
198	HL_30839.1 View exemplar Basepair signature: F-F-F History status: Exact match	3	1
199	HL_74292.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	1
200	HL_22135.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	1
201	HL_84847.1 View exemplar Basepair signature: cWW-F-F-F-F-tWW-F-F-F-F-F-F History status: Exact match	14	1
202	HL_50851.1 View exemplar Basepair signature: cWW-cWH-cWH-cWH-cWH-F History status: Exact match G-quadruplex fragment (1)	9	1
203	HL_66482.1 View exemplar Basepair signature: cWW-cWW-tWW-F-F-tWH-F-F-F-F-F-F-F-F History status: Exact match	18	1
204	HL_92488.1 View exemplar Basepair signature: cWW-cWW-F-cSS-F-F-F-F-F-F History status: Exact match	13	1
205	HL_13877.1 View exemplar Basepair signature: cWW-F-F History status: New id, 1 parent	4	1
206	HL_26934.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	1
207	HL_60914.1 View exemplar Basepair signature: cWW-F History status: Exact match	3	1
208	HL_88558.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F-F-F History status: Exact match	11	1
209	HL_93135.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 1 parent Pseudoknot (1)	8	1
210	HL_85434.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F History status: Exact match	10	1
211	HL_99040.1 View exemplar Basepair signature: F-F-F-F-F-F History status: Exact match	6	1
212	HL_47854.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	1
213	HL_23010.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	1
214	HL_52463.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	1
215	HL_14757.1 View exemplar Basepair signature: cWW-cWW-F-F-tSW-tWW-cWW-tHW-tSW-F-cWH-F History status: Exact match	17	1
216	HL_56500.1 View exemplar Basepair signature: cWW-cWW-F-cSH-F-F History status: Exact match	9	1
217	HL_71925.1 View exemplar Basepair signature: F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	12	1
218	HL_85993.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
219	HL_99748.1 View exemplar Basepair signature: cWW-F-F-cSH History status: Exact match Other HL (1)	6	1
220	HL_00317.1 View exemplar Basepair signature: cWW-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	19	1
221	HL_23509.1 View exemplar Basepair signature: cSH-F-F-F-F-F-F-F-F-F History status: New id, no parents	11	1
222	HL_15118.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Exact match	11	1
223	HL_28540.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 1 parent	7	1
224	HL_42545.1 View exemplar Basepair signature: cWW-F-F-F-F-cSW-cSH-F History status: Exact match	7	1
225	HL_56845.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	14	1
226	HL_72582.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, no parents Pseudoknot geometry (1)	8	1
227	HL_62041.1 View exemplar Basepair signature: cWW-cWS History status: Exact match UNCG related (1)	4	1
228	HL_01508.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F History status: New id, 1 parent	12	1
229	HL_38046.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	1
230	HL_28791.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 1 parent	6	1
231	HL_07903.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F-F History status: Exact match	13	1
232	HL_20781.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	1
233	HL_33983.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
234	HL_68547.1 View exemplar Basepair signature: cWW-F-F-tHS-F-F-F-F-F-F-F-F-F-F-F-F History status: New id, no parents	18	1
235	HL_04641.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
236	HL_63355.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	13	1

Coloring options:
Nucleotide numbers

Exact match 123; New id, 1 parent 44; New id, 2 parents 19; Updated, 1 parent 34; Updated, 2 parents 8; New id, no parents 6; New id, > 2 parents 2;

Hairpin Loop Motif Atlas Release 3.91 Download CSV JSON annotations

Hairpin Loop Motif Atlas Release 3.91

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