Motif HL_08396.1 Version HL_08396.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V88_185 | 4V88 | 0.6410 | 0 | A5 | LSU rRNA | C | 3350 | U | 3351 | U | 3352 | G | 3353 | cWW | |
| 2 | HL_4V19_030 | 4V19 | 0.4638 | 0 | A | LSU rRNA | U | 1185 | U | 1186 | U | 1187 | A | 1188 | cWW | |
| 3 | HL_5F9R_002 | 5F9R | 0.3578 | 0 | Mini UNCG | A | tracrRNA | C | 73 | U | 74 | A | 75 | G | 76 | cWW |
| 4 | HL_4OO8_006 | 4OO8 | 0.3676 | 0 | E | RNA (97-MER) | C | 55 | U | 56 | A | 57 | G | 58 | cWW | |
| 5 | HL_2F8K_001 | 2F8K | 0.3490 | 0 | Mini UNCG | B | RNA (16-mer) | U | 6 | U | 7 | G | 8 | A | 9 | cWW |
| 6 | HL_5FW3_002 | 5FW3 | 0.2875 | 0 | A | tracrRNA | C | 55 | U | 56 | A | 57 | G | 58 | cWW | |
| 7 | HL_4ZT0_005 | 4ZT0 | 0.2450 | 0 | Mini UNCG | D | tracrRNA | C | 55 | U | 56 | A | 57 | G | 58 | cWW |
| 8 | HL_3J9W_075 | 3J9W | 0.4430 | 0 | Mini UNCG (H) | BA | LSU rRNA | C | 1613 | A | 1614 | A | 1615 | G | 1616 | cWW |
| 9 | HL_4V88_153 | 4V88 | 0.1446 | 1 | Mini UNCG (H) | A5 | LSU rRNA | C | 1792 | G | 1794 | U | 1795 | G | 1796 | cWW |
| 10 | HL_4V91_040 | 4V91 | 0.0000 | 1 | Mini UNCG (H) | 1 | LSU rRNA | C | 1792 | G | 1794 | U | 1795 | G | 1796 | cWW |
| 11 | HL_3J79_040 | 3J79 | 0.2104 | 1 | Mini UNCG (H) | A | LSU rRNA | C | 2014 | U | 2016 | U | 2017 | G | 2018 | cWW |
| 12 | HL_4V8P_199 | 4V8P | 0.2479 | 1 | F1 | LSU rRNA | C | 1818 | U | 1820 | U | 1821 | G | 1822 | cWW | |
| 13 | HL_4V9F_041 | 4V9F | 0.2188 | 1 | Mini UNCG | 0 | LSU rRNA | C | 1651 | A | 1653 | U | 1654 | G | 1655 | cWW |
| 14 | HL_5AJ0_044 | 5AJ0 | 0.3225 | 1 | A2 | LSU rRNA | C | 2717 | U | 2719 | U | 2720 | G | 2721 | cWW | |
| 15 | HL_4IOA_038 | 4IOA | 0.3453 | 0 | Mini UNCG (H) | X | LSU rRNA | C | 1581 | A | 1582 | A | 1583 | G | 1584 | cWW |
| 16 | HL_5FDU_038 | 5FDU | 0.2843 | 0 | 1A | LSU rRNA | C | 1612 | A | 1613 | A | 1614 | G | 1615 | cWW | |
| 17 | HL_5J7L_172 | 5J7L | 0.3443 | 0 | Mini UNCG | DA | LSU rRNA | C | 1565 | A | 1566 | G | 1567 | G | 1568 | cWW |
| 18 | HL_4V19_019 | 4V19 | 0.4497 | 0 | A | LSU rRNA | U | 729 | A | 730 | A | 731 | A | 732 | cWW | |
| 19 | HL_3J7Y_020 | 3J7Y | 0.5045 | 0 | A | LSU rRNA | C | 2400 | A | 2401 | A | 2402 | G | 2403 | cWW | |
| 20 | HL_4V88_192 | 4V88 | 0.3966 | 0 | Mini UNCG | A6 | SSU rRNA | C | 276 | U | 277 | U | 278 | G | 279 | cWW |
| 21 | HL_3J7P_041 | 3J7P | 0.6001 | 1 | 5 | LSU rRNA | C | 2738 | U | 2740 | U | 2741 | G | 2742 | ncWW | |
| 22 | HL_4V91_072 | 4V91 | 0.6036 | 0 | Mini UNCG (H) | 1 | LSU rRNA | C | 3350 | U | 3351 | U | 3352 | G | 3353 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAG | 4 |
| CAAG | 4 |
| CCUUG | 4 |
| CUUG | 3 |
| CCGUG | 2 |
| UUUA | 1 |
| UUGA | 1 |
| CCAUG | 1 |
| CAGG | 1 |
| UAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA | 5 |
| UU | 4 |
| UA | 4 |
| CUU | 4 |
| CGU | 2 |
| UG | 1 |
| CAU | 1 |
| AG | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (10)
- Mini UNCG (6)
- Mini UNCG (H) (6)
- Basepair signature
- cWW-R
- Heat map statistics
- Min 0.10 | Avg 0.47 | Max 0.94
Coloring options: