Motif HL_09136.1 Version HL_09136.1 of this group appears in releases 3.80 to 3.84
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | 2-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5TBW_028 | 5TBW | 0.7913 | 6 | 1 | LSU rRNA | G | 1266 | U | 1267 | G | 1268 | C | 1275 | ncWW | ncWW | |
| 2 | HL_2ZZN_004 | 2ZZN | 0.1727 | 5 | D | RNA (71-MER) | U | 13 | A | 14 | G | 15 | A | 22 | cWW | ||
| 3 | HL_6UFM_001 | 6UFM | 0.0000 | 7 | A | tRNA | C | 13 | A | 14 | G | 15 | G | 23 | cWW | ||
| 4 | HL_5UD5_001 | 5UD5 | 0.3753 | 3 | C | tRNA | C | 13 | A | 14 | U | 15 | G | 21 | cWW | ||
| 5 | HL_3D2V_002 | 3D2V | 0.7644 | 4 | A | TPP riboswitch (THI element) | G | 54 | G | 55 | U | 56 | C | 61 | cWW | ||
| 6 | HL_3K0J_002 | 3K0J | 0.6811 | 4 | E | RNA (87-MER) | G | 66 | A | 67 | U | 68 | C | 73 | cWW | ||
| 7 | HL_7TZS_002 | 7TZS | 0.6711 | 4 | X | TPP riboswitch (THI element) | G | 66 | A | 67 | U | 68 | C | 73 | cWW | ||
| 8 | HL_6D12_002 | 6D12 | 0.3410 | 3 | C | human 7SK RNA stem-loop 4 | C | 328 | A | 329 | U | 330 | G | 334 | cWW | ||
| 9 | HL_4WF9_053 | 4WF9 | 0.8635 | 4 | X | LSU rRNA | C | 2382 | C | 2383 | U | 2384 | G | 2389 | cWW | ||
| 10 | HL_7RQB_057 | 7RQB | 0.8810 | 4 | 1A | LSU rRNA | C | 2355 | C | 2356 | U | 2357 | G | 2362 | cWW | ||
| 11 | HL_6DTD_001 | 6DTD | 0.5219 | 3 | C | RNA (37-MER) | C | 16 | U | 17 | U | 20 | G | 22 | cWW | ||
| 12 | HL_4V88_197 | 4V88 | 0.4855 | 3 | A6 | SSU rRNA | U | 450 | A | 451 | U | 453 | A | 456 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUAAUGC | 2 |
| GUGUAACAAC | 1 |
| UAGGGGCUA | 1 |
| CAGGCGGUUAG | 1 |
| CAUGUAG | 1 |
| GGUAAUGC | 1 |
| CAUGUGG | 1 |
| CCUACAAG | 1 |
| CCUGCAAG | 1 |
| CUUUUUG | 1 |
| UAAUUCA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUAAUG | 2 |
| UGUAACAA | 1 |
| AGGGGCU | 1 |
| AGGCGGUUA | 1 |
| AUGUA | 1 |
| GUAAUG | 1 |
| AUGUG | 1 |
| CUACAA | 1 |
| CUGCAA | 1 |
| UUUUU | 1 |
| AAUUC | 1 |
Coloring options: