Motif HL_11434.1 Version HL_11434.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4KQY_001 | 4KQY | 0.1788 | 0 | Pseudoknot geometry | A | SAM-I riboswitch | G | 23 | A | 24 | C | 25 | U | 26 | G | 27 | G | 28 | C | 29 | cWW |
| 2 | HL_4KQY_004 | 4KQY | 0.1788 | 0 | A | SAM-I riboswitch | G | 23||||4_555 | A | 24||||4_555 | C | 25||||4_555 | U | 26||||4_555 | G | 27||||4_555 | G | 28||||4_555 | C | 29||||4_555 | cWW | |
| 3 | HL_4AOB_004 | 4AOB | 0.0000 | 0 | A | SAM-I riboswitch | G | 23||||7_555 | A | 24||||7_555 | C | 25||||7_555 | U | 26||||7_555 | G | 27||||7_555 | G | 28||||7_555 | C | 29||||7_555 | cWW | |
| 4 | HL_4AOB_001 | 4AOB | 0.0000 | 0 | Pseudoknot geometry | A | SAM-I riboswitch | G | 23 | A | 24 | C | 25 | U | 26 | G | 27 | G | 28 | C | 29 | cWW |
| 5 | HL_3GX5_001 | 3GX5 | 0.1098 | 0 | A | RNA (94-MER) | G | 23 | A | 24 | C | 25 | U | 26 | G | 27 | G | 28 | C | 29 | cWW | |
| 6 | HL_5FJC_001 | 5FJC | 0.1489 | 0 | Pseudoknot geometry | A | SAM-I riboswitch | G | 23 | A | 24 | C | 25 | U | 26 | G | 27 | G | 28 | C | 29 | cWW |
| 7 | HL_3V7E_001 | 3V7E | 0.2544 | 0 | Pseudoknot geometry | C | SAM-I riboswitch | G | 23 | A | 24 | C | 25 | U | 26 | G | 27 | G | 28 | C | 29 | cWW |
| 8 | HL_3IVK_004 | 3IVK | 0.4615 | 1 | Pseudoknot geometry | M | class I ligase product | G | 75 | G | 77 | G | 78 | C | 79 | A | 80 | G | 81 | C | 82 | cWW |
| 9 | HL_3HHN_009 | 3HHN | 0.4550 | 1 | Pseudoknot geometry | E | Class I ligase ribozyme, self-ligation product | G | 75 | G | 77 | G | 78 | C | 79 | A | 80 | G | 81 | C | 82 | cWW |
| 10 | HL_4LCK_007 | 4LCK | 0.6548 | 2 | E | tRNA | C | 30 | G | 33 | C | 34 | C | 35 | A | 36 | A | 37 | G | 38 | cWW | |
| 11 | HL_5FDU_013 | 5FDU | 0.5897 | 1 | 1A | LSU rRNA | G | 437 | A | 439 | C | 440 | C | 441 | A | 442 | C | 443 | C | 444 | cWW | |
| 12 | HL_5J7L_146 | 5J7L | 0.6070 | 1 | Pseudoknot geometry | DA | LSU rRNA | G | 410 | A | 412 | C | 413 | C | 414 | A | 415 | U | 416 | C | 417 | cWW |
| 13 | HL_3J9W_049 | 3J9W | 0.6110 | 1 | Pseudoknot geometry (H) | BA | LSU rRNA | G | 457 | A | 459 | C | 460 | C | 461 | A | 462 | U | 463 | C | 464 | cWW |
| 14 | HL_4IOA_013 | 4IOA | 0.6277 | 1 | Pseudoknot geometry (H) | X | LSU rRNA | G | 423 | A | 425 | C | 426 | C | 427 | A | 428 | C | 429 | C | 430 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GACUGGC | 7 |
| GUGGCAGC | 2 |
| GGACCACC | 2 |
| GGACCAUC | 2 |
| CUUGCCAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACUGG | 7 |
| UGGCAG | 2 |
| GACCAC | 2 |
| GACCAU | 2 |
| UUGCCAA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Pseudoknot geometry (7)
- (5)
- Pseudoknot geometry (H) (2)
- Basepair signature
- cWW-R-R-R-R
- Heat map statistics
- Min 0.09 | Avg 0.40 | Max 0.67
Coloring options: