Motif HL_32207.1 Version HL_32207.1 of this group appears in releases 0.1 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1FJG_002 | 1FJG | 0.6255 | 0 | A | SSU rRNA | G | 80 | U | 81 | U | 82 | U | 83 | U | 84 | A | 88 | C | 89 | cWW | ntSH |
| 2 | HL_3PYO_062 | 3PYO | 0.5110 | 0 | A | LSU rRNA | C | 2551 | U | 2552 | G | 2553 | U | 2554 | U | 2555 | C | 2556 | G | 2557 | cWW | |
| 3 | HL_3O58_064 | 3O58 | 0.5158 | 0 | 1 | LSU rRNA | U | 2920 | U | 2921 | G | 2922 | U | 2923 | U | 2924 | C | 2925 | A | 2926 | cWW | |
| 4 | HL_3O58_055 | 3O58 | 0.4847 | 2 | 1 | LSU rRNA | C | 2616 | U | 2617 | G | 2620 | G | 2621 | C | 2622 | G | 2623 | G | 2624 | cWW | |
| 5 | HL_2A64_006 | 2A64 | 0.3686 | 5 | A | RNase P class B | C | 313 | G | 314 | U | 320 | G | 321 | C | 322 | A | 323 | G | 324 | cWW | ntSH |
| 6 | HL_2QBG_055 | 2QBG | 0.0000 | 2 | B | LSU rRNA | C | 2248 | U | 2249 | G | 2252 | G | 2253 | C | 2254 | G | 2255 | G | 2256 | cWW | |
| 7 | HL_1S72_055 | 1S72 | 0.1759 | 2 | 0 | LSU rRNA | C | 2281 | U | 2282 | G | 2285 | G | 2286 | C | 2287 | G | 2288 | G | 2289 | cWW | |
| 8 | HL_3R4F_002 | 3R4F | 0.1595 | 1 | A | pRNA | A | 51 | U | 52 | G | 54 | U | 55 | U | 56 | G | 57 | U | 58 | cWW | ncWW |
| 9 | HL_3PYO_053 | 3PYO | 0.1796 | 2 | A | LSU rRNA | C | 2248 | U | 2249 | G | 2252 | G | 2253 | C | 2254 | G | 2255 | G | 2256 | cWW | |
| 10 | HL_2ZJR_051 | 2ZJR | 0.4029 | 2 | X | LSU rRNA | C | 2227 | U | 2228 | G | 2231 | G | 2232 | C | 2233 | G | 2234 | G | 2235 | cWW | |
| 11 | HL_2ZJR_060 | 2ZJR | 0.4403 | 0 | X | LSU rRNA | C | 2530 | U | 2531 | G | 2532 | U | 2533 | U | 2534 | C | 2535 | G | 2536 | cWW | |
| 12 | HL_2GDI_003 | 2GDI | 0.6591 | 0 | Y | TPP riboswitch (THI element) | C | 27 | U | 28 | G | 29 | C | 30 | G | 31 | U | 32 | G | 33 | cWW | ntWW |
| 13 | HL_2GDI_001 | 2GDI | 0.6456 | 0 | X | TPP riboswitch (THI element) | C | 27 | U | 28 | G | 29 | C | 30 | G | 31 | U | 32 | G | 33 | cWW | tWW |
| 14 | HL_2QBG_064 | 2QBG | 0.5554 | 0 | B | LSU rRNA | C | 2551 | U | 2552 | G | 2553 | U | 2554 | U | 2555 | C | 2556 | G | 2557 | cWW | |
| 15 | HL_2XZM_029 | 2XZM | 0.6455 | 0 | A | SSU rRNA | U | 1330 | A | 1331 | A | 1332 | A | 1333 | U | 1334 | A | 1335 | A | 1336 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGGGGCGG | 5 |
| CUGUUCG | 3 |
| CUGCGUG | 2 |
| GUUUUAC | 1 |
| UUGUUCA | 1 |
| CGGCGCAUGCAG | 1 |
| AUGGUUGU | 1 |
| UAAAUAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGGGGCG | 5 |
| UGUUC | 4 |
| UGCGU | 2 |
| UUUUA | 1 |
| GGCGCAUGCA | 1 |
| UGGUUG | 1 |
| AAAUA | 1 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_32207.1 | Only in the child motif |
|---|---|---|---|
| HL_52574.1 Compare | HL_2GDI_001, HL_2GDI_003, HL_2ZJR_060, HL_2XZM_029, HL_2QBG_064, HL_1FJG_002 | HL_3PYO_062, HL_2A64_006, HL_2ZJR_051, HL_3R4F_002, HL_3PYO_053, HL_3O58_055, HL_3O58_064, HL_1S72_055, HL_2QBG_055 | HL_3V2F_060, HL_1FJG_014, HL_4A1B_063, HL_3U5H_064, HL_1Y26_002, HL_3AL0_002, HL_3LA5_002, HL_3FO4_002, HL_2AW7_014 |
| HL_11547.1 Compare | HL_1S72_055, HL_2ZJR_051, HL_2QBG_055, HL_3R4F_002 | HL_2GDI_001, HL_3PYO_062, HL_2A64_006, HL_3PYO_053, HL_3O58_055, HL_2ZJR_060, HL_2GDI_003, HL_2XZM_029, HL_2QBG_064, HL_1FJG_002, HL_3O58_064 | HL_3U5H_055, HL_3RKF_002, HL_3V2F_051, HL_4A1B_054 |
| HL_64371.1 Compare | HL_2A64_006 | HL_2GDI_001, HL_3PYO_062, HL_2GDI_003, HL_2ZJR_051, HL_3R4F_002, HL_2QBG_064, HL_3PYO_053, HL_3O58_055, HL_2ZJR_060, HL_3O58_064, HL_2XZM_029, HL_1S72_055, HL_2QBG_055, HL_1FJG_002 | HL_3DHS_005, HL_3IVK_006 |
Coloring options: