Motif HL_12261.1 Version HL_12261.1 of this group appears in releases 0.1 to 0.1
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2XZM_016 | 2XZM | 0.0000 | 1 | A | 18S RRNA | A | 652 | U | 653 | U | 654 | G | 656 | U | 657 | cWW | |
| 2 | HL_3O58_008 | 3O58 | 0.5874 | 5 | 1 | 25S ribosomal RNA | U | 278 | U | 279 | U | 280 | U | 286 | G | 287 | cWW | ncwW |
| 3 | HL_3O58_024 | 3O58 | 0.6673 | 3 | 1 | 25S ribosomal RNA | C | 1076 | U | 1077 | U | 1078 | U | 1082 | G | 1083 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUUCGU | 1 |
| UUUGGGAAUG | 1 |
| CUUAAUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUCG | 1 |
| UUGGGAAU | 1 |
| UUAAUU | 1 |
Release history
| Release | 0.1 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_12261.1 | Only in the child motif |
|---|---|---|---|
| HL_57387.1 Compare | HL_3O58_008 | HL_2XZM_016, HL_3O58_024 | HL_2QBG_032, HL_1OOA_001, HL_1OOA_002 |
| HL_61040.1 Compare | HL_3O58_024 | HL_3O58_008, HL_2XZM_016 | |
| HL_75914.1 Compare | HL_2XZM_016 | HL_3O58_008, HL_3O58_024 | HL_3A3A_002 |
Coloring options: