Motif HL_57387.1 Version HL_57387.1 of this group appears in releases 0.2 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2QBG_032 | 2QBG | 0.0000 | 1 | B | 23S rRNA | C | 1172 | U | 1173 | U | 1174 | U | 1176 | G | 1177 | cWW | |
| 2 | HL_1OOA_002 | 1OOA | 0.6792 | 1 | D | RNA aptamer | U | 13 | G | 14 | U | 15 | A | 17 | G | 18 | cWW | ncSW |
| 3 | HL_1OOA_001 | 1OOA | 0.6984 | 1 | C | RNA aptamer | U | 13 | G | 14 | U | 15 | A | 17 | G | 18 | cWW | ntSH |
| 4 | HL_3O58_008 | 3O58 | 0.7819 | 5 | 1 | 25S ribosomal RNA | U | 278 | U | 279 | U | 280 | U | 286 | G | 287 | cWW | ncwW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGUAAG | 2 |
| CUUAUG | 1 |
| UUUGGGAAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAA | 2 |
| UUAU | 1 |
| UUGGGAAU | 1 |
Release history
| Release | 0.2 |
|---|---|
| Date | 2011-12-08 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in HL_57387.1 | Only in the parent motif |
|---|---|---|---|
| HL_97687.1 Compare | HL_2QBG_032 | HL_3O58_008, HL_1OOA_001, HL_1OOA_002 | HL_2ZJR_021 |
| HL_79793.1 Compare | HL_1OOA_002 | HL_3O58_008, HL_2QBG_032, HL_1OOA_001 | HL_1QA6_004, HL_1QA6_002, HL_1S72_031, HL_2QBG_031, HL_1MMS_002, HL_1MMS_004 |
| HL_95727.1 Compare | HL_1OOA_001 | HL_3O58_008, HL_2QBG_032, HL_1OOA_002 | HL_2QUX_005, HL_2QUX_004, HL_2QUX_006, HL_2QUX_001, HL_2QUX_003, HL_2QUX_002 |
| HL_12261.1 Compare | HL_3O58_008 | HL_2QBG_032, HL_1OOA_001, HL_1OOA_002 | HL_2XZM_016, HL_3O58_024 |
Children motifs
| Child motif | Common motif instances | Only in HL_57387.1 | Only in the child motif |
|---|---|---|---|
| HL_61547.1 Compare | HL_2QBG_032, HL_1OOA_002 | HL_3O58_008, HL_1OOA_001 |
Coloring options: