Motif HL_12595.1 Version HL_12595.1 of this group appears in releases 0.6 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3L0U_001 | 3L0U | 0.0000 | 5 | A | tRNA | C | 13 | A | 14 | G | 15 | A | 21 | G | 22 | cWW | ||
| 2 | HL_1QU2_001 | 1QU2 | 0.2378 | 6 | tRNA D-loop | T | tRNA | C | 13 | A | 14 | G | 15 | A | 21|||A | G | 22 | cWW | cWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGUCGGUAG | 1 |
| CAGGUGGUUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGUCGGUA | 1 |
| AGGUGGUUA | 1 |
Release history
| Release | 0.6 | 0.7 | 0.8 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_12595.1 | Only in the parent motif |
|---|---|---|---|
| HL_27658.1 Compare | HL_3L0U_001 | HL_1QU2_001 | HL_3AL0_001, HL_2FK6_001 |
| HL_20252.1 Compare | HL_1QU2_001 | HL_3L0U_001 |
Children motifs
| Child motif | Common motif instances | Only in HL_12595.1 | Only in the child motif |
|---|---|---|---|
| HL_12595.2 Compare | HL_3L0U_001, HL_1QU2_001 | HL_2ZUF_001 |
- Annotations
-
- tRNA D-loop (1)
- (1)
- Basepair signature
- cWW-cWS-R
- Heat map statistics
- Min 0.24 | Avg 0.12 | Max 0.24
Coloring options: