Motif HL_12595.2 Version HL_12595.2 of this group appears in releases 1.5 to 1.7
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1QU2_001 | 1QU2 | 0.8301 | 4 | T | tRNA | C | 13 | A | 14 | G | 15 | G | 16 | U | 17 | A | 21|||A | G | 22 | cWW | cWS |
| 2 | HL_2ZUF_001 | 2ZUF | 0.0000 | 5 | B | tRNA-Arg | U | 913 | A | 914 | G | 915 | C | 917 | A | 917|||A | A | 921 | G | 922 | cWW | cWS |
| 3 | HL_3L0U_001 | 3L0U | 1.0486 | 3 | A | tRNA | C | 13 | A | 14 | G | 15 | U | 16 | C | 17 | A | 21 | G | 22 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGGUGGUUAG | 1 |
| UAGCCAGGACAG | 1 |
| CAGUCGGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGGUGGUUA | 1 |
| AGCCAGGACA | 1 |
| AGUCGGUA | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in HL_12595.2 | Only in the parent motif |
|---|---|---|---|
| HL_12595.1 Compare | HL_3L0U_001, HL_1QU2_001 | HL_2ZUF_001 | |
| HL_98833.1 Compare | HL_2ZUF_001 | HL_3L0U_001, HL_1QU2_001 | HL_1H4S_001, HL_1J1U_001 |
Children motifs
| Child motif | Common motif instances | Only in HL_12595.2 | Only in the child motif |
|---|---|---|---|
| HL_52116.1 Compare | HL_1QU2_001 | HL_2ZUF_001, HL_3L0U_001 | |
| HL_35619.1 Compare | HL_3L0U_001 | HL_2ZUF_001, HL_1QU2_001 | HL_3AL0_001, HL_4MGM_003 |
| HL_98833.3 Compare | HL_2ZUF_001 | HL_3L0U_001, HL_1QU2_001 | HL_1H4S_001, HL_1J1U_001 |
- Annotations
-
- (3)
- Basepair signature
- cWW-cWS-R-R-R
- Heat map statistics
- Min 0.83 | Avg 0.69 | Max 1.21
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